GgaEX0026375 @ galGal3
Exon Skipping
Gene
ENSGALG00000021238 | E1C495_CHICK
Description
NA
Coordinates
chr14:2262282-2263702:+
Coord C1 exon
chr14:2262282-2262439
Coord A exon
chr14:2262752-2262925
Coord C2 exon
chr14:2263654-2263702
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTAATTTCTTATTAGTAT
3' ss Score
5.82
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
GGGAACCTTTCAGCCTCAGGTCCTTCAGCATTGCTCCAATCAACATCACCTTCCTCATGCTCTTTGGGGACAGGTTTGACTATAAGGATCCAACATTTCTCACTCTCCTAAGACTCATAGATGAAGTTATGGTTCTTCTGGGATCTCCGTACTTGAAT
Seq A exon
TATTTCAATTTCTACCCATTCCTTGGATTTCTTTTCAAAACCCACAAGATTTTGCTTAAGAAAATAGAAGATGTGCGTGTCATTATAAGGCAATACATGAAGGCGAGCAGGGAAGATATCAATGAGAACAGTGTAAGGAGCTACACTGATGCCCTGGTATTCAAGCAGCATGAG
Seq C2 exon
GAGAAAAACAAGAAAGACAGCCTCTTCCATGATGACAACTTAATAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238-'8-4,'8-3,9-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.0=100)
A:
PF0006717=p450=FE(13.2=100)
C2:
PF0006717=p450=FE(3.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTTTCAGCCTCAGGTC
R:
TATTAAGTTGTCATCATGGAAGAGGC
Band lengths:
202-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]