GgaEX6012104 @ galGal3
Exon Skipping
Gene
ENSGALG00000004050 | F1NWE0_CHICK
Description
NA
Coordinates
chr14:2269839-2270890:-
Coord C1 exon
chr14:2270733-2270890
Coord A exon
chr14:2270099-2270269
Coord C2 exon
chr14:2269839-2269980
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTTTTTTTTAGCTA
3' ss Score
10.36
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GTGGGCCATTCCGACTTCGGCTTTTGAATGCGGCCCCCACCAACATCACCTTTGCCATGCTCTTTGGGAGAAGGTTTGACTACGGAGACCCAACGTTTGTCACTCTGCTACGACTCATCGATGAAGTTATGCTCCTTCTTGGCTCCCCATTCCTGCAC
Seq A exon
CTATTTAATTTCTACCCATTTCTTGGATTTCTTCTTAAACCTCACAAGATGATACTGAAAAAAGTAGAAGAGGTGTGTGTGATCCTAAGGAAACGTATCCAGGAAAGCAAAGCAAATATTAGTGAAAACAACCTGACGAGCTACATTGATGCGCTGGTCTTCAAACAAGAG
Seq C2 exon
GAGGATAATAAAAGCAATACCCTCTTTCATGATGCAAATGTGTTGGCCTCTGCACTTGACTTGCTCATGGCTGGCACTGAAACAACGTCCACCACCCTGCAGTGGGCCGTCCTGCTGATGATGAAGTACCCCGAGATTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
PF0006717=p450=FE(12.3=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTTCGGCTTTTGAATGCG
R:
GGTGGTGGACGTTGTTTCAGT
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]