HsaINT0044338 @ hg38
Intron Retention
Gene
ENSG00000073067 | CYP2W1
Description
cytochrome P450 family 2 subfamily W member 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr7:985166-986797:+
Coord C1 exon
chr7:985166-985323
Coord A exon
chr7:985324-986623
Coord C2 exon
chr7:986624-986797
Length
1300 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCTCCTGCCTCCTGCCCAGCTG
3' ss Score
6.58
Exon sequences
Seq C1 exon
GCCGGCCCTTCCCGCTGGCCCTACTGGGCTGGGCTCCCTCCAATATCACCTTCGCGCTCCTCTTCGGCCGCCGATTTGACTACCGGGACCCCGTGTTTGTGTCCCTGCTGGGTCTCATCGATGAGGTCATGGTCCTCTTGGGGTCCCCTGGCCTGCAG
Seq A exon
GTGAGGAGCTGCCTCCCATCCTTGGGGTGGGGTGGAGCCTGGAGTGATGGGCGTGCAGCAGGAGGACGGGGGCCCCAGTGCTGTCCCCTCTCAGCTTCTCGGCCCTCCCACCTTGCAAAAGGAATCAGATGCAAGGGCCTGAATCAGGACCCATCCGACGTTAGCTGGTCATGTGGCCTCAAACCAGCCCCTGTGCTCTCCAGGAAATGGGGGATCCCCATCTCCCCCACGCCCTCATCAGTAACAGATGCATCTGCTCAAGAGTGGAGGTGGGAGGCAGGCATGGCTTCCCCAGAATTGCGGGGGGCTCCATGTCTGCCCCCCAAGCCCTGACAGTCCAGGCACCTTCCTGCTGACGCCCTTTACAGTGCCCCAAAACCACAAAAGTTCACCCCTCTGATGTTTGGAACTCGTGTATTTCATTTAGCTTCAAAATGTAAAGATCCCCTCTTTTTGGTCCTCATGGTATTTGATGTGCGTTTACCGAAGCCTGCATCTCAGGTGTGATACCTGCATCACGGCTGGACCCAGAGACCACGGGTCCTAGTCCTCCTGGCTTCCCAGAGGCAGGGCCGTGATGGGAGTGAGTGAGCAGCGGTGGGTTCACAAGCGAGAGCAGGGGGCACAGCTTCCACCCGTCCTAGCCAGGGTGAGACCACCCTGCCTGCTGGTGGAGCCAGGCAGGCCCAGAGCCCACCTGGAAGATGGAGGCTGCACGGCACTGCGTGGTCCGGGGCAGCCCCAGGGCAGCAGAGCATTCCCTGGCCTTCCCTGCTGGTGCCAGCTCCTTACCACAGAGACGCCGCGTGGAACTCACTACTGGCGATCGCGGACGCCCCAGGAAGGCGAGTGGCACGAGGTGTGGCGGGGCTGCCACAGGCAGTCACGGAGCACCCGCTGGTGCCAGGCTCACCCCTCAGATACAGCCTCGTGGGCTGGCTCAGTGGCGGCCCTGACTCTCCAAGGTCTGAGGTCTGCTCTGTCTTCCATTCCATGACTCACAGGAGGTTCAAGGTTACTTCCACTGTGGCAGCTGCCTCCCTCCTCCCTCTCCAGGATGGAAGGAGGTCCTGCTGTGCAAACCTGCCTGGCTGTCCCCTTCCGGGACACGGACAGGGGGTTTCCTGGCAGTTCCTGGTCCTCCCTTGAGGGCTAAGGGTCCCCCCGTTCTGTGGCCGCCTCCAGCACATCCACCCAGAGTCCCTGGGCGTGAACACAGCCGCTGGGGACGATCACCGCCTGCCCAGCGTGCAGCCCTGGGGCTGCGTCCTTATCTCCGCTCCTCCTGCCTCCTGCCCAG
Seq C2 exon
CTGTTCAACGTCTACCCATGGCTCGGGGCCCTGCTCCAGCTGCACCGGCCCGTCCTGCGCAAGATCGAGGAGGTCCGTGCCATTCTGAGGACCCTCCTGGAGGCGCGGAGGCCCCACGTGTGCCCGGGGGACCCCGTGTGCAGCTATGTGGACGCCCTGATCCAGCAGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073067:ENST00000308919:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
NA
C2:
PF0006717=p450=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCGCTGGCCCTACT
R:
CTGCTGGATCAGGGCGTCC
Band lengths:
319-1619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development