RnoINT0044557 @ rn6
Intron Retention
Gene
ENSRNOG00000062306 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:RGD Symbol;Acc:1561655]
Coordinates
chr7:14544594-14545751:+
Coord C1 exon
chr7:14544594-14544676
Coord A exon
chr7:14544677-14545016
Coord C2 exon
chr7:14545017-14545751
Length
340 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCCACCCTGTTCTCCCGCAGGAA
3' ss Score
12.27
Exon sequences
Seq C1 exon
GTCTATGACCCCTTCCGCTTCGACTCAGAAAACCCACAGAAGAGGTCTCCTCTGGCTTTTATTCCCTTTTCTGCCGGGCCGAG
Seq A exon
GTGAGGCGAAAGCCCTTGGATAACTGAGGGGACAGGGGAAGTTGGGATGGTTGGTTCTGGGTCTCCTTCCCGCCCTCTACTCAGGAAATAGGTCTATAGAGCCGGGCTGGAGGTGAAAGGCGAGAGCCCTATGGTCATAGCTCTTCTGGTCCTGATCTGTCTTGGGCACTGAGTTTGAGAGAGCGTTGGAAGTGGCAACACAACACTTGGATTCCCCAGGATCATCAGCGCACCTTCGGCCTCTCGGGCAGGCGTGGCACGACAGGGACTAGTTCAGTTCAAACCTTGGGGGCTGGTTAGGTCTCAGTAAAGTCAGAGTCCCCACCCTGTTCTCCCGCAG
Seq C2 exon
GAACTGCATAGGACAGACTTTCGCTATGAACGAGATGAAGGTGGCGGTGGCGTTGACGCTGCTGCGCTTCCGACTCCTGCCAGATGACAAGGAGCCGCGCCGGAAGCCGGAGCTGATCCTGCGCGCGGAGGGCGGGCTGTGGCTGCGGGTGGAGCCGCTGAGCACAGGCGCTCAGTAACACCATCTAATGTCCCAGTCACTCTCCTCTGCACAATTCAGAAAAAGCGGAGCCTCACCGAGAGCCAGCAGGGGGCGCTGCAGGACAACAGACTCTGGGAGCCTGGCTAGGGCTGCTGTCTGAGTCCAAGAGCCTTTCTAGGTGACCCACCGGGCCCACAGACTGATGAGAGTTGCACCCAAGCTCAAGAAAGGCCTTTGTTCCTTTGGCAATAGGGAGGCACCATAGATCTTTAAGCAGGAGAGATATAAGGTTTACTGGCAGATTTGAGGCAGTTTACTTCTTTCTTTTGTGTTTGAGACAGAGTCTCAGCTTTCAGTGGATACTGCAGGCAGGCCTTTAACTTGCAGCAAATCTCTGGCCTGACCACTCGAGTGGCAATTAGAAAGTGCACCACTGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCCGACTGCTCTTTCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062306:ENSRNOT00000060284:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCGACTCAGAAAACCCA
R:
CAGAGTCTGTTGTCCTGCAGC
Band lengths:
343-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]