HsaINT0044455 @ hg38
Intron Retention
Gene
ENSG00000171903 | CYP4F11
Description
cytochrome P450 family 4 subfamily F member 11 [Source:HGNC Symbol;Acc:HGNC:13265]
Coordinates
chr19:15912573-15914387:-
Coord C1 exon
chr19:15914305-15914387
Coord A exon
chr19:15913910-15914304
Coord C2 exon
chr19:15912573-15913909
Length
395 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCCCTCACTTTTGCCCCCAGAAA
3' ss Score
9.96
Exon sequences
Seq C1 exon
GTCTACGACCCCTTCCGTTTCGACCAAGAGAACATCAAGGAGAGGTCACCTCTGGCTTTTATTCCCTTCTCGGCAGGGCCCAG
Seq A exon
GTAAGGATGGCCTGTGTCTGAGGCAGAGATGGCATGATGGGTGCAGGGGTCCAAAAAGGGGGAAGTTACAGATGGTCCCAGTTCCAGCTCTCCTTCCCTCCCTTCCTCAGGAGTTCATGGGCAACTGTTCACAGAATGGGTTTGGGAAGGTCCTAGAGGGGTCTGCGGTGTGCTCAGAGTCCCCTCCTTCATCTGTTTATCTGAACTGGGGGTAGGAGCCTGGGCCAGGTTTGGGGGATATGCAAGCACACATGGGAGTCCTGTGGACACTTATCCCCTCTTTCTGCCCCTCAAGCCTATGTGGGTGCGTTTGGGGTCCCAGGCCAGGTTCTAAGCATGATGGGGCCGGGATGGGGGTCATGGGCACAGTCAGATTCCCTCACTTTTGCCCCCAG
Seq C2 exon
AAACTGCATCGGGCAGGCGTTCGCCATGGCTGAGATGAAGGTGGTCCTGGCGCTCACCCTGCTGCACTTCCGCATCCTGCCGACCCACACTGAACCCCGCAGGAAACCCGAGCTGATATTGCGCGCAGAGGGTGGACTTTGGCTGCGGGTGGAGCCCCTGGGTGCGAACTCACAGTGACTGTCCTACCCACCCACCCACCTCTGTAGAGTCCCAGAAACAAAACTATGCTGACACCTCTGCTTGAGCCTCGTTGACAGCCAGCATGGGGCTCCTGGGGACTGGTGGGATCTAAGAAAGGGAGGTGAGTGGGTGGAGGCAGGGTGACGTCTCTGAACCCAAAACCCTGACGGCCTCTCTGGCTGAGCACAGGGCATCTAGGCCCTTAGTGGGTTCTCCCAGAGCCCAAGTAAAAACTTTATCCTGTGGGCAGTAGGGAGCCCTGGGAGGTGTTTGAGCAGGAGAGGGAACAGGATTAAGAATGGGTTTAAGGAGCAAGACTGAGACTCTGATTCAGCGAGAAACAACCATAGGGGCAGATCCCTTCATCTGTCCTGGGAATGTCCTCCCAAGACTGGAGTCCTCAGCTCAGAACAAAGGGAAAGGGGTGCAGCTTCCACCCTGGCAGGCTCTCAGAAATTTTTAGTTCCTTTTTCCACCAACTTCCCACCCCTGTTTCTCCCCCTCCCAGTGCGTTCTCTCTGTGACTCTCTTCCCTTACTTTCAGAGGCATAGGATCTGGAGCCAGACTGCTTGGGCTCAAGTCCTGGCTCTGCTGCGTGACTTGAGCAAGTTAATTCCTCTCTCTGTGCCTCGGTTCCCTCAACCATATAATGGAGACAACAGCATTACCTATATCAGGGTTTTCCTGAGGTCTCAATATAAGGGACTCAGAGCTGTGCCTGGCACACAATGAATGCTAAATATATGGAGCCATTATTATTTCCTGTCTCAGAAAGTCTGGCTGTTAAAGAATGTTGTCTTTCAAGATCGTTATTTCTACCACGACTTTAAAGGCTGTGTTTTGGAACTCAAAGGCAAAAATTCTAATATCTGTGCTCCTTGAACAACCTCTTCTCCTAGAGGGCTGTGCATATAAGATATGTATATATATATATATATTATATATATATATATATACACACACACACACACACACACACACATATATACATATACACACACACACACACACACACACACACACACACACATATATATATATATATATTTTTTTTTTTTTCCTGAGGATGGTGAAGGTACCTGACTGTGTGAGGTGGTAGGAGAATGAGAGAAACCTCAGTCAGTGTCTCAAAATAAAATCCTGCTACAAACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171903:ENST00000402119:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(1.3=17.9)
A:
NA
C2:
PF0006717=p450=PD(10.6=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTTATTCCCTTCTCGGCA
R:
ACCCACTCACCTCCCTTTCTT
Band lengths:
342-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development