RnoINT0044605 @ rn6
Intron Retention
Gene
ENSRNOG00000043344 | Cyp4f40
Description
cytochrome P450, family 4, subfamily f, polypeptide 40 [Source:RGD Symbol;Acc:1559596]
Coordinates
chr7:14868603-14871411:+
Coord C1 exon
chr7:14868603-14868747
Coord A exon
chr7:14868748-14871357
Coord C2 exon
chr7:14871358-14871411
Length
2610 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
ATGATTCTTGTTCATGTCAGCTG
3' ss Score
5.87
Exon sequences
Seq C1 exon
TCCCCTCCTACAGAAGAAGGCATGAAGCAGATGACTGAGCTGGTGGCCACCTACCCCCAGGGCTTCATGACCTGGTTAGGCCCTATAGTTCCCCTCATCACTTTGTGCCACCCTGACATCATCCGATCTGTCCTCAGTGCCTCAG
Seq A exon
GTACCCATGGGAACTGTTGGTGGTGTGTCTGTGGGAATCTGAGAACTTCTAGTCCTGACTTCCATTCTTCTGTGTGTGCCCCTACAGCAACCCAATCTCTCCTTCCCTATCTCTCTCTCAGGCTTTCATGTACTTACCATTCCATGTCAATCTCTTCTTCCTCTATTTCAGTCATTTCCTTCTTCCTAGCATTCTAGCACTCATGGTACTCCTGGAATGCCAAGAGATCTTGAGCAAGGCTCTGTCCTAGTGGAACCCAATCTGGAAGAGATGTGTCCCGATAAAGACACTCCAACCACCTGTGCTCAGGAATGGCCCTAAGGAAGATGGGTGATGGTTGAATGGAGAAGTGAGTCTGCTAGTACACGTAGGAATACTTCCTGGAGGAGGACCCATGACCAGACAGACATGACCAGACGCTAAATCAGTGAAGATCTAAGAGAGACAAAGCTAGGCATCTGGAATGAAGACAAACCTACCCTGAAAATAGGAATGTTTAAAGTAGGGGCAGGATGTGCAGGGCCTATGTAGGGCTATAACCCATCCCATTCCCAAGCAAAGCAATGAGCCAGTGTATACTAATGTGGGATACAGTTGCTATTTCTAGAGTTTTCCTATTCCTCCAGTTTGCCCATCATATGTTTATTGCTCACTGCAGATGACCCAAGGCAAGGTGATTGCCTTGCTAGATGGCCATGGCAACATACATTATCTCTGGCTAAGCATGGTTTATACCTGGGATCATGTGAAGATGGCCTTGTCTGGAACTCTGAAGGGGCCATGGACATAGGAATGTTGAACTCTGTGTGGCTGAGCAGTTGTTTTGGATAACATTTTGACCATGTTTAGGGTTGTTTGATATCTGTCATCCAGAGTTGCACTGAGACATGACTGAGACCTTGAGATTTGTGTAAGGTAGATCTTAGGGTATATCCATGTCTGATGTTAGATCACACCTGTTACACATCTGAGATGATAACATGACTATTCTTTTTATCTATGTACAAATATATGCATATATTTGTACATACAAATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTATGGGTTACTCTGGCGTTTGTGTGCCTATGTGTGTGGAGGCAAGAGGCTAACATTGGATGTCATTCCTCATGAACTATACACCTTATTTTGGGGAACAGAGTCTCATCATGACTTAGCAATCACTGATTAGTCTGTGATGGGTACCCAGAATTTACTTGGATTCTGTATCCTCGGAACTAGGATGAAAAGTGCGTGCCACACAGTCAACTCTTTATGTGGGTGCTGTGGATGGGACTCAAGTCTTTCTGTTTGCATGGTGAACATTTGCCAAATGAAGTCTCTCTACACCTTACAGTAACCATTTTAAGAAAACTTCTGGCACACACTGAGAATCATCAGACCCTCTCTATATATGTGTTTGAGTAAAAATGGTCTCCACAAGCCCATATGATTAAGAGATGTAGCCTTGTTGGAGTAGGTGTGGCTTTGTCAGAGTAAGTATGTCACTGGGGTGGGCTTTGAGGTCTCAGATGCTTGAGTCATGCCCAATGTGGCAATCTTGTCCTGTTGCTGGTGAATCAAGATGTAGAAGTCTTAGGTCCTTCTCCAGCACCACATCTGCCTACATGCTGCCATGTTTCCTGCAAAAACAACAATGGGCCAAGGCTCTAAACTGTAAGCAGCCCCAATTAAATATTTTCCTTTATAAGAGTTGTTGTGGTCATGGTGTCATTTCACAGCAATGTGTTACATTAGATAGAGCCACGTCATGGAAGACTATGTGTGTTTAGCTATGTTAGCACATGTTAGGTATTAGGATGCTGTGTTGGCTGGCTTTGTGCATCAGCTTGACACAAGCTAGAGTTATCACAGAGAAAGGAGACTCAGTTGAGGAAATCCTCCATGAGATCCAGCTTTAAGGCATTTTCTCAATGAGTGATCAAGGGGGGAGGGCCCAGCCCATTGTGGGTGGTGCCATCCCTGGGCTGGTGGTACTGAGTTCTATAGGAAAGCAGGTTGAGAAAGCCATGAGCAAGCAAGCCAGTAAGCAGCACCCCTCCATGACTTCTGTATCCGTTCCTGCCTCTGGGTTTCAGCCCTGTTTGAGATCCTATCCTGACTTCCTTCAATAATTAACAGCAATATGGAAGCATAAGCCAAATAAACCATTTCCTCCCCAACTTTAGTCACAGCAATGGAAACCCTGACTAAGACAGTGCACATGTAGTGTTCATCTGTGTCACATGTGTATGTCAGGAGATGACAGAGTCTTGAGTGAATGGGTGTGCTAGGTCTATGTAAAGGTCTCAGAGTGTTGTACTGTGTTGACATGTTAGGCCATGTAGGAGCCATGTGAATGCAAACTTGAGTGTGCTATGCAGTGTCAGGCCACACTTTTGTCCTACCTCCTCCTATAGCTTAGTCTGGCTCCTGCTTACTGCTCCCCAACTCCCTGCCTCCTCTATCTTTCTCCACAATCTTGCCATTCTGGCTTGAGCTAGACATGCACACCTCTGATCAGGGCACAAAACTCTTCCCAAGTTCATCCTCTGCATTCTCCATTGGCCCCTGATGATTCTTGTTCATGTCAG
Seq C2 exon
CTGCGGTTGCTCCCAAGGATGGCATCTTCTACAGCTTCCTGAAACCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043344:ENSRNOT00000066654:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]