RnoINT0044610 @ rn6
Intron Retention
Gene
ENSRNOG00000043344 | Cyp4f40
Description
cytochrome P450, family 4, subfamily f, polypeptide 40 [Source:RGD Symbol;Acc:1559596]
Coordinates
chr7:14877529-14877905:+
Coord C1 exon
chr7:14877529-14877595
Coord A exon
chr7:14877596-14877775
Coord C2 exon
chr7:14877776-14877905
Length
180 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
TCTACCTATCTGCTCTTCAGGCC
3' ss Score
8.23
Exon sequences
Seq C1 exon
GATGAAGACGGAAAGGAGCTGTCAGATGAGGACATCCGAGCGGAGGCTGACACCTTCATGTTTGAGG
Seq A exon
GTGAGAGCATCAGTGAAGATAAGGGAAGGGGTAGGAGTCTCTCTACCTCAGGAGTCTGGGTCTCTCATTCTCTGTGCTCTATCTTTTCCCTACCCTCCTTAAAACGTCACTGCTTGAGTGCTGTCCACTCAGTGGTGCTGAAACAGCCCAGAAGCCCAAGTCTACCTATCTGCTCTTCAG
Seq C2 exon
GCCACGACACCACAGCCAGTGGGCTCTCCTGGATCCTGTACAACCTGGCGAAGCACCCAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCAGGAACTCCTGAGGGATCGTGATTCTGAAGAGATTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043344:ENSRNOT00000066654:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.7=100)
A:
NA
C2:
PF0006717=p450=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGACGGAAAGGAGCTGT
R:
TCAATCTCTTCAGAATCACGATCCC
Band lengths:
194-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]