RnoINT0044624 @ rn6
Intron Retention
Gene
ENSRNOG00000043233 | Cyp4f6
Description
cytochrome P450, family 4, subfamily f, polypeptide 6 [Source:RGD Symbol;Acc:708365]
Coordinates
chr7:15205384-15206040:-
Coord C1 exon
chr7:15205770-15206040
Coord A exon
chr7:15205451-15205769
Coord C2 exon
chr7:15205384-15205450
Length
319 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TGGTCTTGCTTTATGTACAGGAT
3' ss Score
6.92
Exon sequences
Seq C1 exon
GTCTAACAGTGAATACATAGCTGCGATCCTGGAACTCAGCTCCCTCATAGTGAAACGGCAACGCCAGCCCTTCCTGTACCTGGACTTCCTGTATTACCTCACTGCTGATGGGCGGCGCTTCCGCAAGGCCTGCGACGTGGTGCACAACTTCACAGATGCTGTCATCAGGGAGAGACGCAGCACCCTCAATACCCAGGGCGTTGATGAATTCCTAAAGGCCAGGGCTAAGACTAAAACTTTAGACTTTATTGATGTTCTCTTGCTGGCCAAG
Seq A exon
GTGGGTTTTTCCGGGATCCAAGTTGCATGGATCTCAACGTTCAACATTAGATAGAAGTTAAGTTTCATCTAAGAGTTCTAGGGAGGCATAGTGGTGATTGTGAAATGAAGGGTCAGGTTAGAGATAAGTTTTAGATGTGGCTCTGCTGAATGCTGTGTAGAAGAAACAAAGAATAGCAGAAACCAAGGAGAAAACTGTGAGGCGGGCCCTGAGGATAATATGGGAGACCCTGTGTGAGCGGTGGGTGTCAGAACTTGTCGAAAGACAGACTCAGGAGTGCTCAGACACTGTATGAGTTGTGGTCTTGCTTTATGTACAG
Seq C2 exon
GATGAGCATGGGAAGGGGCTGTCGGATGTGGACATCCGAGCAGAGGCTGACACCTTCATGTTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043233:ENSRNOT00000066095:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(19.4=100)
A:
NA
C2:
PF0006717=p450=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACAGTGAATACATAGCTGCGATCC
R:
TCCGAACATGAAGGTGTCAGC
Band lengths:
334-653
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]