RnoINT0047712 @ rn6
Intron Retention
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13108231-13108492:+
Coord C1 exon
chr20:13108231-13108344
Coord A exon
chr20:13108345-13108385
Coord C2 exon
chr20:13108386-13108492
Length
41 bp
Sequences
Splice sites
5' ss Seq
TACTGGGCA
5' ss Score
-27.57
3' ss Seq
TGGCATCCAAGACTGTGCCGGTG
3' ss Score
-8.11
Exon sequences
Seq C1 exon
AAGTCGGACCAGCCTCCATGATTGTTGGGAACCTGGTTGCCGGAAAGAGGATCGCACAGGCCTCTGGGAGAGAGCTGGCCCACCTGGAGGACAGTGACCAGGCTCGCAAGGTAC
Seq A exon
TGGGCAGCTCCTGGGGGCAGGTGGCATCCAAGACTGTGCCG
Seq C2 exon
GTGCGAGGCTTCCTCTCTCTCTGCAGTTCCTGTTCCTGGCGGACGTGCTGCAGTGGAGGGCTCACACCACTCCCGACCACCCGCTGTTCTTGCTCCTGAATGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212:ENSRNOT00000066017:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(4.0=52.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCTCCATGATTGTTGGG
R:
CTGCAGAGAGAGAGGAAGCCT
Band lengths:
132-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]