DreINT0057167 @ danRer10
Intron Retention
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:600018-601037:-
Coord C1 exon
chr9:600937-601037
Coord A exon
chr9:600099-600936
Coord C2 exon
chr9:600018-600098
Length
838 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
GCGTGTGTGTGTGTGTGTAGTTT
3' ss Score
6.49
Exon sequences
Seq C1 exon
AGGTGGGTCCGGCTTCTATGATCGTGGGAAACCTGGTGGCAGGAAAGAGGATTGCACAGGCCTGTGGCAGAGACGTGACCCAGCTGGAGGACCACGACCAG
Seq A exon
GTACAGGCCAAATCAACCCAGACTCACTTTCACTGCTGCAAAATCCAGCTTAAACCAGCCTAGGATGGTTGGCTGGTTTTAGCTAGACAACCAAGCTGGTTTTAAAGGAGTTTTGGCCAATTCCAAGCTGGTTTCCAGCCATTTCCAGCCTGGTTTTAGCTGGTCAGGCTGGGAGATGACCAGCTTGACCAGCCTAGCCAGGCTGGGAGCCCAGCCAAAACCAGCTATGTCCAGCTTAAACCAGGATAGTCAAGCTGGTTTTAGATGGTTTTAGCTGTTCACTTTCCAGCCTGACCAGCTAAGATCAGGCTGGAAATGGCTGGAAACCAGCCTGGAAGTGGCCAAAACCCCTCTAAAACCAGGCTGGTCGATCACCTAAAACCAGCTAACCATCCTAGGCTGGTTTAAGCTGGATTTTCTGCAGGGTTTATCAAAATATGGAGGATCACACGTAATAATAAAGCCGCTATTAAGTGACATGCAGTAAACACGATGATCATGGATTTCAGCGTTAGACAACACGTAATAAAGGTGTACTATATGACAAAACACTCTTAACCCTTAACCATACCTCTGAACTAGTCCATAACCTTAACCAACTCTACCCTTACCAGTAAACCTGTCTCTACAACTAAATGTATCCCCAAACTAACCAACCAATAGACTTTCCTGTATCACTAAACATTTTTAATGTATGTATGTCTGTAATTAACTGGAATGTACTCCGCTAAGCCTGCTCCAGTCCTGAACCCAACTGGACTCAACTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTGTGCGTGCGTGCGTTCGTGTGTGCGTGTGTGTGTGTGTGTAG
Seq C2 exon
TTTCTGTATCTTCAGGATGTCCTGCAGTGGAGAGCTCAGGCCACGCCAGATCACCCTCTGTTCCTGCTGCTCAACTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058:ENSDART00000115030:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(4.0=70.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGGTCCGGCTTCTATG
R:
CTTAGAGTTGAGCAGCAGGAACA
Band lengths:
182-1020
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]