HsaINT0048087 @ hg38
Intron Retention
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46551634-46551904:+
Coord C1 exon
chr21:46551634-46551743
Coord A exon
chr21:46551744-46551823
Coord C2 exon
chr21:46551824-46551904
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
CAAGTCGCCCTCTCGTGCAGTTC
3' ss Score
6.15
Exon sequences
Seq C1 exon
AGGTTGGACCAGCCTCAATGATCGTGGGGAACCTGGTTGCTGGGAAGAGAATCGCTCAGGCTTCCGGGAGAGAGCTCGCCCACCTGGAGGACAGCGACCAGGCACGGAAG
Seq A exon
GTGACAGGCCAGTTCCGGGGACGGGTGGACGGGTGTCTGTGCCCCGGAGGCGCCAGTGAGCAAGTCGCCCTCTCGTGCAG
Seq C2 exon
TTCCTGTTCCTGGCTGACGTGCTGCAGTGGCGTGCCCACACCACTCCTGACCACCCGCTGTTCTTGCTGCTGAACGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305:ENST00000400274:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(10.7=70.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGCCTCAATGATCGTGG
R:
CAAGAACAGCGGGTGGTCAG
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development