MmuINT1008614 @ mm10
Intron Retention
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76279706-76279966:-
Coord C1 exon
chr10:76279857-76279966
Coord A exon
chr10:76279787-76279856
Coord C2 exon
chr10:76279706-76279786
Length
70 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
AGGCTCCTCTCTCTGCACAGTTC
3' ss Score
7.83
Exon sequences
Seq C1 exon
AAGTTGGACCAGCCTCGATGATTGTTGGGAACCTGGTTGCTGGAAAAAGGATCGCACAGGCCTCTGGGAGAGAGCTGGCCCACCTGGAGGACAGCGACCAGGCTCGCAAG
Seq A exon
GTACCGGGCATCTCCTGGGGGCAGGTGGCATCCAAGACAGTGCAGGTGCGAGGCTCCTCTCTCTGCACAG
Seq C2 exon
TTCCTGTTCCTGGCAGACGTGCTGCAGTGGCGGGCTCACACCACTCCTGACCACCCTCTGTTCCTGCTGCTGAATGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231:ENSMUST00000160048:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(4.0=70.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGGACCAGCCTCGATGAT
R:
GAACAGAGGGTGGTCAGGAGT
Band lengths:
172-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types