GgaINT0051029 @ galGal3
Intron Retention
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6919482-6919810:-
Coord C1 exon
chr7:6919701-6919810
Coord A exon
chr7:6919563-6919700
Coord C2 exon
chr7:6919482-6919562
Length
138 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TTTCAATCCATCTTTTTCAGTTC
3' ss Score
8.28
Exon sequences
Seq C1 exon
ATGTTGGTCCTGCCTCAATGATAGTGGGAAACCTTGTTGCTGGAAAGAGAATTGCACAAGCCTCAGGGAGAGATGTTACCCAGCTGGAGGATAACGATCAGGCAAGAAAG
Seq A exon
GTAACACAAGTGTCCTAGCAATATTAAACATTTGAATTGGTTTCTTCCAAGCGAGCAAAGAATAGTTATGGTATTCTGCTGAAACTAAGCACGGGACGTTTTTAATAAACCTTAATGTTTTCAATCCATCTTTTTCAG
Seq C2 exon
TTCCTGTATTTAGCAGATGTTCTTCAGTGGCGAGCTCAGACAACTCCAGATCATCCCCTCTTCCTGTTGTTAAATTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228:ENSGALT00000010067:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(4.0=70.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGTCCTGCCTCAATGAT
R:
TGGAATTTAACAACAGGAAGAGGGG
Band lengths:
188-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]