RnoINT0048642 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146041710-146045434:-
Coord C1 exon
chr6:146045042-146045434
Coord A exon
chr6:146042043-146045041
Coord C2 exon
chr6:146041710-146042042
Length
2999 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
CAACCCTCTAATGTTCTTAGGAG
3' ss Score
5.66
Exon sequences
Seq C1 exon
CACATTGGGAATCTCGAGCTCCTGGTACAAGGATACAATAAGCTGAAACAGACCCTTCTGGAAGTTGAATACCCTCTCATTGAGAAAGAGCTTGGAGCCATTGATGAGCAGCTCAGGGTGGCTGCAACCTGGTTGACATGGCAAGATGACTTCTGGGTCTACATGGAGAAGGTGCAGGTGGCCACTGCCGAGCTAGAGCGCAGAGTGTCACAGACTCAGAGCAATGTGCAAACAATCCAGCAAACCATGCAGGCCTGGGCTGAGTGGCCACTGCTGCCCCGGAGGGAGACCAGAAGAGAGGCTGCCTTAACCTTGGATGACAAGGGGGATCTGTTTGCTAAGAAATACAAGCTGATCCGAGAAGATGGCTACAAGATACACAACCTGGTAGAG
Seq A exon
GTAATAGCTTCTGATATTTTAATGGATATAGGTCTTTTTATTTGGTAAAGAGCCACAAATGCTGAACTTAATGTTGTAGATCAAGCCTGAAGGAGTTCGTAGATGGTTCGAGTCGAGTTTAAGGTGGAAGGATTTGTGTTATTCCCCTGTGGTTTGTGTAGCCCCCAATCCTCATTCCCCAGGGAGAGATGTGAATATGAGGGACAATGACCAAACGGAAAAGATAGAGTTGGGATCCCTGTTTGTCCCCTTGAGCTGATCCCATTGACTGCTATTTAATTCTACCATTTGGTTGGCTGGTGTTAGCTACCATGTTTTCATGACCTCCCAAAGATGACAGCAGATATTACTCTGCTTTTAAAATATACATTTGGGTTTCTTGGAGCTAGAAAGATGGCTTGGTGGTTAAGAGGCTCTTGTAGAGGACCTGGGTTCCATTCTCAATATCACATGACAGCTCATAATCGTCTGCAACTTCAGTTCCAGAGGATCCAATACACATTTCTAACCTTAGTGGGCACAAAGTATCTGTAATATAATAAAATAATTCTCTGTATGTATGCATGTCTGTCTGTCTGTATGTATGTATATGTGTGCATATTTGGGTTTTTCAAATTACCAATAAGCAGATTTCTAAGGTAAACAATTGAGGAAACAAAATAAACTGTTATGTCAGTTACCCCTAAGGCAGCCATGTAAAACAGCAGGAATTATGGCCTAGGGACAGAGTCAGGGACAAGAAAGCTAAGCTTTAAACGGAGACATTAGGAGCCCTCTTCACTAAATGAGAAGTCCTACAGAAGGCTGAGGATATTAAGTAGCAAAAGAGCCTAAGATCTGAGGTGTAGCAACCTGGCCCACCCAAAGATCATTGTGATGGTCAGCATCACTGATAAGGAATATATGTGAGGAACTGTTCTGGGATAACATTTAGAGTGGTCATGTGTACATATCACAGGTTTGGTAGCTATGGTGAAGACTTTGACCTGATGGGAAGATAGCAATCAGAGACTCTGCTCAAAGCTGCTTCTGTTGAGTGTAAGCCACAAGGAGGCAGGAAACAAGAGACAGAGCCAGTCAGGAGGTGAGCATCATGATCCAGTGAGAAATGGTTTAGCCTAGGTCATGGGGGATTGATCATGACTGGCATGAAATCAGAGAGGAAACTGACCTCAACAGAAGCAACGAAGACAGTTCTCCATGGAAGGGGAGACTGTGCATCCTGGCACACAGGGCTAGGGGTTTTGTAGACTGTGAATGCAGGTGTACCTATTGGGGAGGGGGCTTGGTGAAAAATGTATTGCCCTTAGTTCTGCCTCTGCAGTTTTACATATGAACTGTCTGTGTCAACAAGTATCCTTGAGTGTGGAGGCCTCCATGTCATGATTTGCCAGAGATATTTTTACAGTTTAGTAATGATGAGGCTTGGATATATTTTGAAGGAAGAGCCAATGAGACTTGCTGTAGGGAGTCAGGGAAATCAAGGTTTCAAGTCTAAGCAGATCAAGAAATGAGGTCTCTGATACAGGGAGAAGGTATTGAATCAGGTTTTGGGGGAAGAATCAGGATTTGGACTGGAGAGTGTCAGCTAAAGATGGTTATCGAAGATTTTTGATACAGGTTGCATTGGAAGTGTCTTGTGTTTAAGGCACAAGTCCAGGAGACTAACACAGAACTGATAATCACAAATTATGTATGTATGTATTATGTATTTGTGTATTATACATACATGTATTTATGTATGTATACACATATATTTATTAGATAAGAATAAATGGAAATTGGTTGTAGATGAAGAAGAGGTCCTTGCAGTACTCCGTAAGGTTAGCAGAGGAGGAGGATTCCTTTTGAAAGGAGACAGCGGTACTCTGAAAGGAGCAGAGTTGGGAAGAGCTCACCTCTGCTCCATTCCACACTTAGGACCTAGAAATGAAGGCCACAGCTGGACATGAACTGGGAAAAGTAGAAACCATTGGAACCTTGGCAAAGAGACTTGATAGTGTAAACCTCATTAGGAATAAGCTAGGTGGAGATTGGTAGAAATGGATATCACCATGGTTCTAGAAGGAACCTGAGTTCTACTTTTCCCTAAATACAGAAAAGCCCATCTCTTCTGAGAACCTCAGCAGCATAGCAAAGTGATTCTGGTGTGACTGGTGTATCAGAGAGGCCCTGCCCTAGGGACAGGAAAGGATGGTGATTTCCAGTCCTGCACAGCTGCTGCCTTCTACCTGGGTTGACCCTAAATATATCATAAGTATTTGTTTTTCATATCTTCCATAGGAGACTGAACAAAGTTGGTCTTTAGGATTTTCCCCTCTTGCTTTTGTATTTATCCTTTTGCCTTCTAGTAACCACAGAAGAAAAGGCTGCTGTGTCAGGTTCTCAGGATGTGTGCTGCATGCACACAGGTCACATAGACTAGACAGATGTGTATATTGCTATGTCAGGTTCTCAGGATGTGTGCTGCATGCATACAGGTCACAAATTTGGATGTTGCAGGTACAGGGCAGGACATAAAAAAATCTCTAAGAGAAGTAGCCTTTACATTTGAGAACAGCAAACCCATAGGATTCCCATCTCCACCTTGGTAATATTCCAATGTCCCAGAATAGTGTTCTCAGAAGGACATAAGAAAATCTCTTTATATTTACAAAAGAGCCCTAGATAGCAAAATTTGAGACAGAGCAAGGACTAGAGCCTGGGGCATAATATTTTGGGGACTGGTATATTTCTTGCCTGTATTTGAAGATAGCAATTTTCAAGTTGATTTTTCTTCTAAGGGATACTTTTTGAACATATGTGATAAGTGAGTTTAGTGTTATACTATTATAAAATCCTCCAGCAGTATTTGCCGTCTACCTCGAGATTCTATAGCCTTAGGTTTGAATGTTTCAGTGCCATGCACAAAAACTCAATCCTTTCTTCAACAGCCTCTCTTGTAGTGCTCCTCCTTTTTATGCTGGTCATCATTAATCCCAACCCTCTAATGTTCTTAG
Seq C2 exon
GAGAACCGGAAGCTCTTCAGAGCTGATCCTTCCCTGGATTCCTGGAAAATTTATGTGGAATTCATCGATGACATTGTGGTGGAAGGCTTTTTTCAGACCATCTTGCATGACCTGGACTTCTTCCTGAGGAACACAGAGAAACAGTTAAAACCCGCGCCATTTTTTCAAGCACAAATGCTCTTAATGCCCCCAGAGATTGTGTTCAAGCCCCCTTTAGAAAGAGAGGCTGGGGATGGCTTCTACAATCTGGTGGAGGCAATGTTGTGTGGCAGCTTCAAGGTGTCTGCCCAGATGGGGCGTGTGGCGGCACACCTGGACATCCCCGACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(9.5=42.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]