BtaINT0050238 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30472970-30480698:+
Coord C1 exon
chr4:30472970-30473362
Coord A exon
chr4:30473363-30480365
Coord C2 exon
chr4:30480366-30480698
Length
7003 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
TAATACTTGTCTGTTGGTAGGAA
3' ss Score
5.25
Exon sequences
Seq C1 exon
TACATTGGAAATCTTGAACTTCTTGTGCACGGATATAATAAGCTGAAACAGACTCTTCTGGAAGTTGAATACCCCCTGATTGAGGACGAGCTGAGGACGGTGGATGAGGAACTGCAGGCAGCCGCCACATCGCTGACATGGCAGGATGACTGCTGGGAGGATATCAAGAGGGTAAGGATGGCCACCTCAGAGCTGGAGCGCAGAGTGGAGCGTGCGCAGAATAACGTCAGAGTGATCCAGCAGACCCTGCGGGCTTGGGCCGAGTGCCCGCTCCTTCCCAGGAGAGAACACAGGCGGGAGACCACCATGACTTGGGAGGACAAGAGTGAATTATTTACGAAAAAATACAAGCGAATCCGGGAAGACGGCTGCAAGATACACAACTTGGTTGAG
Seq A exon
GTACTTGCCTTTTTCTTTTTTAATTTCTATTTGTTTATTTGCTGCACCAGGTCTTACTTGCAACATGTAGGATCTTCCCTGTAGCATGTGGGCTTCTCTGGAGTTGTGTTGTGCAGGCACCAGAGTGTGCAGACTCAGTAGTTAGTGTTCAGGCTCGTAGTTGCTGTGCGATGCTGGGATCTTAGTTCTCTGACCACGGGTGGAGCCTGTGTCCCCTGCATTGGAAAGCGAATCCTTACCCACTGGACCAACAGGAAGTTACCAAGCCCCCCAGCCATACTTGCTTTTAAGGCTTCAAAGTTTATAGCAGCTCCTTTCATTAAGTTTGTTTCTTTTGTTCAGTCACTTAGTCCTTTCCGACTCTGCAACCCCATGGACTGTAGCACACCAGTCTTCCCTCTGTCCTTCACTGTCTCCCAGACTTTGCTCAAAATCATGTGCATTGAGTCAGTGATGCTGTCTAACCATCTCATTCTCTGTAGTCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAGCTTCAGGGTCTTTTCCAGTGAGTCAGCTCTTTGCATCAGGTGGCCAAAGTATTGGAGCTTCAGCATCAGTGCTTCCATTGAATATTCAGGGTTGATTTCCTTTAGGATACACTGGTTGGATCTCCTAGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAGCACCACAGTTTGAAAGCATCACTTTTTTGGCTCTTAGCTTTCTTTATGGTCCAACTCTCACATCCATACATGACTACTGCAAAAACCATAGTTTTGACTGTACGGACTTTGTTGGCAAAGTGATGTCTCTGCTTTTTAATACACTGTCTGGGTATGTCTTAGCTTTCCTTCCAGGGAACAAGTGTCTGTGAGTTTCATGGCTATAGTCACTGTCTGAAGTTATTTTGGAGCCCAAGAAAATAAAAGCTATCACTTCTTCCATTTTTTTTCCCTTCCCTTTGCTGTGAAATGATGGGGCAGATGCCATGATCTTAGTTTTTTGAATGTTGAGTTTTAATCCAGCTTTTTCACGCTTTTCTTTCACCTTCATCAGGACGTTCTTTAGTTCCTTTTCACTTTCTGCCATGAGAGTGGTACCATCTGCATGTGTGAGGTTGTTAATATTTCTCCTGGCAATCCTGATTCCAGCTTGTGATTCACACAGCCTGACATTTCTCATGATGTACTCTGCATATAAGTTAAATAAACAGGGTGACAATATACAGCCTTGTCATTCTCCTTTTCCATTTTGAACCAGTCTGTTGTTCTATGTCTGGTTCTAACTGTTGCTTCTTGACCTGCTTACAGATTTTTCAGGAGATAGGGAAGGTGGTCTGGTATTCCCATCTTTTAAAGAATTTTCCACAGTTTGTTGTGATCCACACAGTCAAAGGCTGTAGCATAGTCAGTGAAGCAGAAGTAGTTGCTTTTCTGAAACTGCCTTGCTTTCTCCATGATCTAACAAATGTTGGCAATTTGATCTCTGGTTTGTCTACCTCTTCAAGCCCCAGCTTGTACATCTTATACATTTGCATACTACTGAAGCCTAGCTTGAAGGATTTTGAACGTAACCTGGCTAGCATGTGAAAATGAGCACAATTGTTTGAATATTATTTAGCACTGCCCTTCTTTGGTATTGGAATAAAAACTGACCTTTTCCAGTCCTCGGGCCACTGTTGAGGTTTCCAAATTTGCTGGCGTATTGAGTGCAGCACTTTAACAGCATCATCCTTTAGGATTTGAAATAGTTCAGAAGGGCTCTTTTATTGGACCCAAAAGAGCTTTATGTATGGTTTTACTAAGCATTGAAAATGGAGGAATTTGTATTACTTGCCTGTCATTTCTTAGACCTTACTGTGCTCATGTCTGAGGGAAGAGATAGGAATATGGGATCTTTTGGTAAAACAGAGAGGCTAGAAATGGGGTTGTTGTCTTGGTCATAGTTATCACCTGTTTTGAATGCTGTGAGTAGCTACCACTGTTGGGCAAATGCTCTGTGTGACATCCATCTTGTTGACATCATCTCATGTAACCCTCTCAACCACCCACTAAGGGTGACACCGGTAGTTACTCTCCTTACAACAAGTACTTGAGCTTTTGAAGCAGTGATAGGCACTATTCCAGAGTTATCAAGGTAGGAGAAGATACAAAATAAAGCAAGAGCAAAGAACAGAAGACAGAAAGCAAAGCAAACGAAAAAAGACTCTTGTTTCTTAAACCATACACCCTTGTCAGGGAATAGAGAAAGAGAAAATAAAAAATATATAATAGTACCTCAGTTGATCATAGGAGCAGGGGTGAAAAATAAACAGAGATGGCAAGAGAGAGACTCAGTGGCAGGCAGGGTGGACGTTGTATTTGAGGTGGTTAGAAGGACCTCTTTACTGAGGTAGCATTTCTGCTGAGAACTGAAAAGGAAAGCACTATGTGGAAAACAAAAGAAGGATGTTCTAGTATCAAAGTACAAAAGCTACAGGAGTATCGGTCGTGTGACAAAGCAATGATAAACCCGGTCAGTGTATTAAAAAGCAAAGACATCACTTTGCCAACAAAGGTCTCAGAGTCAAAGCTCTGGTTTTTCCAGTAGTTATATACCGATGTGAGAGTTGGACCATAAACAAAGCTGAGTGCTGAAGAACTGATGTTTTTGAATTGTTATGACCAACCTAGACAGCATATTAAGAAGCAGAGACATTCCTTTACCAACAAAGGTCTGTCTAGTCAAAGCTATGGTTTTTCCAGTAGTCATGTATGGATGAGAGAGTGAGACTATAAAGAAAGCTGAGAACTGAAGAATTGATGCTTTTGAACTGTGGTGTTTGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGGTCAAACCAGTCAATCCTAAAGGAAATTAACCCCAAATATTTATTGGAAGGACCGATATTGAAGCTGAAGTTCCAATACTTTGGCTACTTGATGCAAAGAGTAGAAAAGGACACTGATGCTGGGATAGATTGGAAGGCAAAAAGAGAAGGGGGTGGCAGAGGATGAGATGGTTGGATACCATCACCGACTCAGTGGACATGAGTTTGAAAACTCTGGGAGATAATGGAGGATACAGGGAAGCCTGCCATGCTGCAGTCCATGGGGTCACAAAGAGTCACACACGACTTAGGGACTGAACAGTAATGGGTAGCATATCTAAGGATCAGTTAGAGAGCCAGCCTGCCTGAAGCGTAATTTCCAAGGGGAATAATTGCACATAATTACGTTTGAAAGGGACTAAGGACAAATCCCTGGTGACTCAGGAAAGAATCTGCCTTCAGTGCAAGAGACATGATATCCATCCTGGGTCAGGAAGATCCCCTGGAGAAGGGAATGACAACCCACTCCAGTATTCTTGCTGGGAAATTCCATGGACAGAGGAACTTGCGGACTATAGTCCTTGGGGTTGCAAAGAGTCAGACATAACTGAGTGCCTGCTTTTAAGGGGCAAATCACACAGGATCAGCAGGCCATTTTGAGAACTTTGGGTTTTGCTCTAAGGGGAAATAGCAGCCAGAGACTCTCTGCTCATAGGCCTTCCCTGTTGAGTGAAATGGGAGGCAGGAGATGGTAGAGAGAGAGACCATGAGGGGATGAGTCTACAATCCAGGTGATGATGGCTTAGGTCAGGGTGACAGTGGTAAAGAGTAGTCATGTGCTGGATGTATTTTGAAGGCAGAGCCAAGAATATCTTCTGTGACAAGTCAGGGGACAGAGAAGTCGAAGATGAAATTGAGGTTTTTGGTCTGGGCCACTGGGAAAATAGTTTCCCTTTACTGACATGAGGAGGGCTATGGGAGAGCAAGATGTTGTAGAGAAAAGACAGGATTTGTCTTTGGGCATGTTAGTTAGAGATGTCCACCCAAGCGGAGATTTTTGCATAGACTGGCTTTGGAATTCTGTGAAGAAAAGCAGCAAATGCATTCACTAAAAAGTAACGTATGGGACATTTGATATGCTGTACTGAGTGTCACAAAATAGGGGGGAAAAAAGAGAAAAATGCATATGGGTTTCAAAGACTCTGTTCACTTGCAAGTTTGTCTGAAATATCTAAGGAAGTATTAGTTTTCCCTACTGGTAACACTTATAAGGCTTTGCTGACTGCCTGTGTTAGCACTCTCGGGCTGCTAGTAACAGAGTAACAAATTCTGTAACAAAGTACCACAGATGGATGTCTTAGAACAACTGAATTGTATTCTCACACTGACTGGAGGCTAAAAGTGTGAAATCAAGGTGTGGGTAGGGCCATGCTCCCGCTGAAGGCTCTCCCTAAGGCCTGGGTAGCTGGGGCTTCCCGGGTGGCTCAATGGTAAAGAATCTGCCTGCCTATGTAGGAGATGCAGGTTTGATCCCTGGGTCGGGAAGATCCCCAGGGGAAAGAAACGGCAACCCACCCCAATATTCTTGCCTGGGAAATCTCATGGACAGAGGAGTCTGGCGGGCTACAAGTCCATTGGATCTCAAAAGAGTCAGATATGACTTAGCGACTAAACAAGGCTTGAGGGAATCAAAGGGATGTTATGATATGTAAAGAGAAAGTTTTTTCAGCAGTATCTTAACTTACTCATTCCGTTGACTATTCCTAGTTTGCCAAGGTACTGTGAATTATGCTGACTTTCAGGACACACTTACGAGTGTTCATGCCTTAGAATCTGTGTCATGGAGGACAGATGATGGGTTATGATTAGCTTCTTCTATTGTATTTTCTTGATAATAAAAAAGTGGACTCCCCAAACAGTGACTTGGGGGTTTAGACCAGTAAAATTTATGAATCCTGATCAAAATGCATTGAAATTGTTGCCAATATATGACTGGAAATAGTTATAAGCAAGGTTTTGTTGTGTTATTCTCACAGAATAAGTTTGGAGTTTTTCTACTGGTAAGTAAACTCTGCTTTATGCCTTTAAGTAAAAAACTAAGAAGCTTTGAAGTCACCAGGAACTGTGGAGAGCTTCCAGTTTGAGGGAGTGCAACTTTAAAATAGAAATGAAGCAATTACTTGTTTCTGTAGTCTGTGTTTTAAATGATTGCCCCACCTCTTATTAGCTCATCATTTTGAGCTTGGTCCTCAGACTTCCAGTGAGGAGTGTGGTTTTGGGAAAGCCAGCAGCAGGTGGGTAAGCTCTGCCTTTTCATGCCATGCCCTTGTGGCTGTCGATTCTCAGTGCATGTCTGTAGTCAGCATCTAAGATGATGAGAAGGGCAGAACCGTGGACGATTGGGTCTGGAAGGGACCTGAGTGATCATTCAGTCACCCAAAGCTCTCCCTTCTATTTCTCTTCCTCCCTATACTGTAAATTGTTGAAACTACAACAACTTCTTGTAAGTGGCACTGTAGTGATATACACTGAGTCTCTTGATATGAGAAAGTAGGAACAGTGAGGAAATCACAGGTGTATTACTGTGACGTGTTGCAAAGAACCCTGCTTTGAGGAGTCAGGAGGCCTGGCTTCTAGTTCTCGTTCCTATTAATGGGATGCTGGATGCATTTTAGGTCTTTGTTTTATACCTTCAAGATGCAGAGCCTGAACTCTTTAAGATAGTCTTTGAGGATTTTTTTCACCCCTTTGACCTCTGTACTTCTTTCTGGTTTCCGCAGTGGAGACAGGACTGCTGTGCACAGCTGTCTGGGGTGTGTACTGCCCAGCTCCAGCGGTGTGGGTCATATACAACACACAGATGTGAATGCTTCCACCTGGGTGGTGGAAAAGACAGCATCCCTGAAAACAGCAGTTCTTAAATTTGTTAGAACGCAAAAAAAAAAAAAAAAAAAAAAGAACAACCCTCAAAAACTTGCTAATTCCTGCCCTGCTTTATCAGGATTGAGAGTCACCTCTGTAATTCTGATTCTTGCCTGTAGCACACACCTTTGAATCCTGGATCATATCTCCACAGTGGTGAATAATCAAAGAAAGCATAATCTACCTTATAATCAGCTGTTTTGCTATCATCTTTTCTCTGTGTCCCCCTTGGTAGCTCAGATGGTAAAGAAATCTGCCTGCAATGCTGGAGACCTGGGTTTGATCCTTGGGTCAGGAAGATCCAAGGATGGCAACCCACTGCAGTATTCTTGCCAGGAAAATTCCATGGACAGGCTGTCGTCCAGAGGGTCACAAAGAATCGGACACGATTGAGTGGCTAACACACTTTCTCTGTGTCACAGTAGCTTCTGTCTTCTGCATCTATTCTCTGGCCTGTATAGACTTCAGCCTTTGCCACTCAGAAGGTACCCCTGGAACCAGCCTTGTTGCTCACCTGACGTTTTCAAATCTCTGTCCCTCGACCTGCTACACTGTGCCCAACCTCTAGTCTCCTTAACCGTGTCCAGGTCTGGGCTGTTGTGCCCCTTGACCCACCCATGGGGAGATGTAGAAGTTGAATTTGATGTTATTGAAGCACAAAAGGAGGTTGGACTTCCCTAGGTCGGTGTTTCCCAAGTTGAGTTAGTATTATTCCTCCAGCTGCTCATACGTGGGTGGCCCAAAATAATTTTGTGTTTGAAGACAATCAGTTAAACCAGGTTAATGGACTTTAACATAAGTACAGTGCAAGTCCCCAAAAATGGCCTAGAGCACATCACCCTATGCTGACTTAGTGATCTCTGGTTACCCCAGCACAGTGTTCTCCGGCCGACTGGCTGGATGGGGGAACCTCATTTACAGGAGAGGGCCTGGAAGGTCAAGTCTCAGACTCCATCCATCTAGGATGTTTTGGGAAATAGTGTAGTTTTTGTGTGTATTTGTAGGTAGCAGTCTTCGTAATGATTTCTCCTTTAAAGAATGACTTTTGAATGTATTTTATAGATAAACTAAGTGTTACAAAATCCTGCTTAGGTCATTGCCATCTGGCTTAAGATTCTACAACTAAGCATTTGAATGTTTCTATGTTGTACCCCCAAATGCAGCCCCTTTAATGTACTATTTAAATGAACAGCTTTCATTTTTATACTCACTGTTGTCTATACTGATCTATTAATACTTGTCTGTTGGTAG
Seq C2 exon
GAAAATAGGAAGCTATTCAGAGCCAATCCTGCTCTGGATGCCTGGAAGATTTATGTAGAATTCATTGATGACATCGTGGTGGAAGGCTTTTTTCAAGCAATAATGCATGACTTAGACTTCTTCCTGAAGAACACAGAGAAACAATTGAAACCTGCACCATTTTTTCAAGCACAGATGATCTTAATGCCCCCAGAGATTCTGTTTAAGCCTTCTTTAGAAAGAGAGGCTGGAGATGGCTTCTATGATCTGGTGGAAGAAATGCTGTGCAGTAGTTTCAGAATGTCTGCCCAGATGAAGCGAGTAGCAGCACATCTGGAAACAGAAAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(9.5=42.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]