DreINT0058024 @ danRer10
Intron Retention
Gene
ENSDARG00000077384 | dnah11
Description
dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
Coordinates
chr16:19553254-19554056:-
Coord C1 exon
chr16:19553661-19554056
Coord A exon
chr16:19553587-19553660
Coord C2 exon
chr16:19553254-19553586
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTGCTGTTTCTTCTTCCTAGGAA
3' ss Score
10.78
Exon sequences
Seq C1 exon
AAACTTGGGAGCCTACATTTATTGGTGGAGTGGTACAATAAGGTGAAACAGACGACTCTTGAAGTGGAGGCTCCTCTTCTAAAAGAAGAGATGAAGACCATTGACCAGCAAATCCATCGAGCAGAAACTGAGCTTACATGGCAAACTGAGAACAGCTGGAACTACATCTGCATGCTTAAGCACACCGTCTATCAGCTGGAAAGAAGACTTCAGAAAACTAAAGACAACATTGAGATGATAAAAGCTCAGATGAAAGGATGGAGCAAACATCTGACATTTTGCAGAAAAGATCACAAGAAAGACATGGTACTACAACTAGAAGATAAAGCTACAATAGTAGCACAAAGTTACAGAAACATCAGGAAAGATGCAGAAATTATCCATAATTTGTTACAG
Seq A exon
GTATGGATATGCTGTATTCATCAATTCTTTTTGTTAAAGCATTATTCTCTAACATTGCTGTTTCTTCTTCCTAG
Seq C2 exon
GAAAACATAATGTTTTTTGAGGCCGATAGTTCATCAGATGAATGGAAAGCCTACTTGGAATATGTAGATGATATGGTGGTGGAAGGATTTTTCAAAGTGATCTCAACCTCTCTGGAGTTTTTCATTGAGAACATGGGGGGGTCAGTGAGGCAGGCTCCCTTGTTCGAGGCTCAGATGCTACTGATGGGATCTGAGATTCAATTCAAACCATCTCTTGATCGAGATGGTGGTGATGGACTTTATGAACTGGTGGAAGAATTACTTGGTGATGTGTTCAAGATGTCTGCTCAGGTCAAGAGAGTGGCACCACACCTCATTGTGGAGGACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077384:ENSDART00000148294:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(9.6=42.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGGAGCAAACATCTGACA
R:
TCTGATGAACTATCGGCCTCA
Band lengths:
180-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]