RnoINT0048688 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145888296-145898505:-
Coord C1 exon
chr6:145898344-145898505
Coord A exon
chr6:145888530-145898343
Coord C2 exon
chr6:145888296-145888529
Length
9814 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ATGCGCTGTCTATGTTTCAGCCA
3' ss Score
6.9
Exon sequences
Seq C1 exon
ATGGTTTTTTGTTTCTCACCGGTTGGTCACACTCTGAGAGTTAGAGCCCGGAAGTTCCCAGCCCTAGTTAACTGCACAGCTATTGACTGGTTTCATGCATGGCCACAGGAAGCTCTGGTCTCAGTCAGCAGGAGGTTTATTGAAGAAATCGAGGGGATTGAG
Seq A exon
GTAAGTTGTGTCAGCCTGAGGTAGGTACCCAGAATTGCTCAAGTCTCAGTACACTATAGGCAGGCAGTGCAGCAGCGAAGTCAGCCACCTTTAGTTTCACAATCTCTGTATCAAATATGTATCCGCTTACTTCTTTTACATTGTTTTTCATTGTTTCTAGTTTTTGTGCATTGTTGAGGGTGGGACTCTGGCCTTATGGGGTTTTTTAGTTATATCTGTTACTTCTTCAGGAACCTAGTACCTCTGACTAGGTTTTTAAATGTCTGTGTGAAGTAAGCAGTTTTAAAGAGTAAAGGAAGCAACTGAAGCAAGCCTCCCGATTCCCAGATGTGGAGTTGAAGTCTAGTTCCTTTCTGATTAGAGAGATTGTGTTAAGGTGCTACTCCTAAAGAGCTTTGTTCTTGCTACCCATTGAGCAATAAGGTGGGGGTGCCTAGAATAGTCCCAGAATTAGTGGAAGTCACTCTCTGAGCCAAAATTGATTGGGGCCCCTAACAATGTCTCAAGTCCTCATCCTCTCTCTTACTCCAGAAGCCATGACCACCACTCTTGCAAAGTAGCATTACGAGATTTAGTTAGATAGCGTGTTCTTGGGTGGCCAGAAGGTTAAGTCTGGGTTTATAAACTTGAGCAGTTAGTGTGCAGCCAGCTTTATTGTTTGGTATGTCACTTTTCCTTTGCTTCTACTCAAAAAGGGGGTAACCATATGGGTGTGTGTATTTTGTAAGTGGTAAAAAGCATTCACTGATGTGTACAGATTTTTCCCCCTAAAAAATGTCCATGAATCTGTCTATCACTGGACTGCCAGGGGAAGCAACATTTAACATGGCAGACACATCTGGGATGGGAACATGTCTGCCTCCTCCTCCCCGTTCCATTCTCCACAGTCACATGACGAGCACATGTACAAGGAAACAGAAAAGAAAAGGAAGTTCTTCTGAATTTGGGGCGGGGGGGGCGAGGATTGGATCTTCACATCTGGAGAGCCATTAGTTATGATAAAGTAGTGTTAAGTGTTACTCCCAGCCCCTAGGACAGTCACCAGGTTCCTTGCGATGTGGAAGTACTGGAGTATCATCTTGTCTTCCAACAGTGAGAAGAGAGGTTAGAAGTTCTGAATCTACAGGAATCAACCAGTGCCCCATATTACTAGCAGATTTCTAGTTTCCTTGGTTCATTTTGTCAGGCTTGCAATGGAATAAGTGGGCTGGTTTCTGAATATAGTTTTAATTTTCCTCAGTTGGTAGGGGATCCGTGCTGGCAGATCGAGGGAAGCATACACATAGCCTCACAGCCTTCCAGTCTTTGGTCTTTACTGTCCTGTGTCTGTGTCTGCTTTCTCCAGTGGAGCAGCAGCTCAGCCTGGCCAGAACTATTGACACCTGCTGGATGAGGCGGGCTTTGCAGTCCCGAGGACTGCACAAGGTGCTGCAGTCTATCTGACGGTGTCATGCCGCCTCCTATAGGATCCTGAGTGTCAAATAGGAACACTTTTCAAGCCCTTCAGCGTTTCCACCAAGCTAAATTACACCTGCTAACAAGTCAGCCAGAAGATTTCCTTTCCGTGTAAGGTGCCTATTTAACCCTCCCACCTTCCTGATTTGTCACAGGAAGCAAGAATTGTAATTCAGAGCACACTGGGACCGCATTCCCCTAAAAACATGTAGTGTCTTTTCTGTAGAGGTCAGAAACGGCTTTTAAATAAACCAATGAGTACACATGGAGGGACCCATAGCTCCAGCTGCATATGTAGCAGAGGATAGCATTGTCTGGCATCAATGGGAGGAGAAGCCCTTGGTCCTGTGAAGGCTCGTTTCCCCAGTGTAGAGGAATGCCAGGGCGTTGGGGTGGGAATGGGAGGGTAGGAGTAGAAGCATCTTCATAGAAGCAGGGGGAGGGGTTGGGAGAGTGAGGGAAGAAGGATAACATTTGAAATGTAAATATATAAAATATCCAATAAAAAAGAAAAAGTGTATGATCCTCCAAAAAATTTTTTTGAACAAATGCTAATTTGATCACTTTCTTAGTCTTAATTTTCATTATCAAGACTGAATGTTATCTACATAATTTTGGCACTTCTTAATTATTGACCTCATTGGGTGAGTGGAAGGTACTTATACAAGGTGACCCCCTTTGGCCATAGAGAAAGAATTCATTAACCACAGGCCATTCTATATACATTGACATGTAAATTCCCATCAGGACACACTCAGCACCCAAGGCTATGGCAGCCCACAGCCCGGGCTGCATCTAACTGAACGGGTATGCTTTTCCCCCCACCCCCTGTTACCTGATACTGAACTAAATGACAGCTGACAAATAAAAGTCCAAAAGCAGTCTGACACCTAAGTGTCATCATTGTGCGGGTGTTCATCAGACACTCTGTCAGCCTGTGCTGCCTCTCGATGTGAGGTAGGAAGTGACAGTGTAAAGCAAGAGGGAGGGACAGTCCTGTATTCCATTAGGAGTGGGGTTGAAGATGCAGACCGAAGCACACTGGGGATGTGATCCGGTGAAAACCCTACTGGTCAGTGCACAGGCTCCAGTTAGGAACGCATAGGGCCAAAAGTAGATGGTATTGGGAACATAAAAGAGAAACTTGGTTTTGGTTTGCTTGCTTGTTTTTTGTTTTGTTTTTTAGGCAAAATGAGCCTTAGGCATCATTGAAATCAGGGTGATATGAAAGGACACATTCATTGTAAATTAAAAAATGAGCTGACTGGAGAGAGTGAATTCTGTTGCAGGATTTGAGGACAGAAGCAGCTCATGTCACTTGGGCATGGCATCTTGAAGGTGATTCTTTATGCAGGAAGGCAGGTACAGGGTAGAATGAGGCTGTCATTGGACGAGAAGGAAGGATGGGCGGGAACAAAGTTTTTAAAGGCGAAGGAGCGGGAGGTAGAGAAGGAGCTGGGAGAACATGGCAGCAAATGTTAAGATTCTTCTCTGTGCATAGATAAAGGTTGTTTTGAATATTTTTAAGGGATGGGTGTGTACAGGATTTTGTGCTGTCTAGATGGGCAATTCTTCTTATCAATTGGATCATAGGTTATTGTGTGGTGTGTTCTGTTTTTCATGTGGTGACTTGAGTTCAAGAAAAGGCACCAGTGGTAGGATGCACCAAGCCGCCGTGGAATTGGGATGTGTAAGCCTGGTGTGGTAACAACCCCCCAAGGGAACTGTGAGTGAAAGCAATTGTGACAAGGTGCCTCACTGGAATGGCTCGCGGACTGCCAGGAAGGACAGAGAGTATCTTGGGGCAGCATGGAACCACTGGGATAAAAGTACCCCACAGTGCCATGCAGATGCTCAGCACTAGAGCCGGTCAAAAGGGAACCAAGTGCACGTGGCCATGGGTGCTGGAACTAGATAGTGCAAGATATCCCACAGTGCCATGCGGGCCCTACAGGTGCCAGCACTAGCACGGGATAAAGGGTAGAGCCAGTTTTTTAATATTTACCACAACCGCACTGACTGACAGAGGAAGGTCTGCCCTCCTGAGGTAATGACACTACAGTGTGGGCTCACAGTTCAATGCCATGCCACTGGTGTTTCTGACATATCAGCAACCCATACCTGAGAAGGTATAGCATAGAATGGCAGGTGATCCACTCAAATAGAAAAGTTACCTTTCTGCCAGATTTAGATTTGGTGCTTCTTCAGTACCTACACATGTATGTGACTACACATACCACACACACATACATACACATACATATACACATACATACCACACACATATTCAACTTTCACACACACTACACACACATACCATACAACATACAACACATACACACACATAAATACACACATACATACACACAATACACACATACACACATACATCACACACAATACACACATAAATACATACACACAATACACCCACATACACATACACCACACACATAAACACATACATATAACATTACATACGCACACAATACTTCACCAACATATTCACACATACATACATACATACATACACACACATACACACACATACATACACACATACATACACACACATACACACACATACACCCACATACACATACAGCACATACACACATACCACACACACACACAAACACACACATTCTTTGTGTCAAACAGGAAGGGATTTACATTTATGGCATCAGATGATAGCCTATACTACAGTTGATGATTTGGGCCACAATCTTTCTTTTGAAATATCAATGACAAGTGTTAACTTATAAAGTCCAAGTTGACCAGCTGTATTTAGGAGAAAATACCTCTGAAATGTGGAACAGTGCGTACCACAATTTAAAGTCATACACCCAATACACATTACACACACACACATACATACACATACATATACACTACATACGCACCAATATTCACACACATATTCACACATACATAATACATACATACACACACATACACCACACAATACATACAACACATACATACACACACCATACACACCACATCAAATACACCCACATACACATACACACATACACACATACACACACACACACAAACACACACATTCTTTGTGTCAAACAGGAAGGGCATTACATTTATTGCATCAGTGATAGCTATACTACATTGATGATTTGGGCCACAATTCTTTCTTTGAAATATCAATGACAAGTGTTAACTTATAAAGTCCAAAGTTGACCATGCTGTATAGGAAGAAAATACCACTGAACTGTGGAACAGATGCTACCACAATTTTAAAGTAGAATCCTGGACCCTGTTGGTAGCCCTCGTGAACTGGGCTTAGCTATATACGTACTCAATAAAGTACAAAGAATAAAGACACAGGGAATGTGGAAACAGAAAAGCAAATTTGTGTAATGGGGTCACATTGGAGAGAACATCAAAAGAGGGGCCTAGTGAGATCCTACGTCCATCTTTAATCTACTAGCATAAGGTCAGGTTTAAATAGAGTGCATGAGCTTTAGGTGGTTAGGAAGTCCTGATCCAGGTGCAGCCCCACCGTGGCCCCTTCAGTGTCTGACCAGAAATGTATCTGATGAGTTGTATGAAAACTCCTTCTGCTAGCGATCATAGTGGCTTCAGCCNGTTTGGCATTTCAAATTCTTTGGGGTCTGTTGTTTCAACAGTCTGATAGCTGAAGAGAGGATTGTATACAGCCTTTTAGGATGCCTAGTTTCCTGCACAGTAGTTACACTGAAGCTATTTGAAGCATCAAGACAAAACCAAAAGAAGATCNNTCTGTCCTCAAATGGGTGGGGAAGATCCATCACTGTGCACACCCTTCCCCATCGGTCTTCTTTAGCTGTGCATGTAAGTGTATCATTACATATGTGGTGCAAGTTTAGAATAGTTTTTAAAACAATGCTATGTTCCCAACATAGTTTTACAGCTTTCTAAAGGTTAGGAATCCTGCCACCCATGAAAACAGGGTCCAGTTCTTATGGCTGTCCAGGATCTCTTGCGTGTCTTGTCCAACTAGAACCAGCTCTACATAAAAGTTCATAGTTTTGGGGCTTTTGTGGATGTGTTAGCCTCACCAGCCACAATATTCCCAAAGCAAGGGTTCTCAGGGGCTGGGGAGATGGCTTGATAGGTACCAAGCACCTGCCACACAAGTGGTATGTAGTGTGTTCGTGTGCATGTTCGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTTCTGATCCTAGCACCCACATGAATTCTGGGTGGGGATGGCAGTACTAGAGAGGCAGAGAAAGGGGATTCCCAGAGCAAGCAAGCTACCTAAACTAGCTAAATCAATGAGTTCTGGGTTCAACTGAGAGACCTTCCCTCAGTATATAATAAGGTGGAGAGTGATTAAGGTAGACTGCAATATCAATTTCTAGTACATACTTATGTGTGAAATGAAACACACACAAGATGGATGGATGGATGGGTGGATGGGTAGGTGGGTAGAAAATAGATGGATGAATGAATGAAGGAAGGATGGATAAAAGATAGATGACTGAATGGAAGGATGGGTTGAAAATGGATGGATAGAGGATGGATGGATGATGGATGGATGATGGATGGATGGGAAGAGAGTAGCTGGGCTTCCCTGAGTTTCCTCTGGACTCTTCATTGCATGAATTTTCAGTCATTTCAATGTTTCCATGTTGTGGAAGAGACTCCAGGAGCCACCTCTTCTGATAGTGGACCTGATCTCGCCTCTGACCAATCAATTAATTCCAACTTAAAGGAAAAAAAATAAAAAACCACAAAGGTAGAGAACTGCCTTGCATCAGTATTCAGCACTTGTTGAAGCACTGTGCATGACTCTAGTGACTGCACTGTTTACCTCTCTATCCCAGCCTCAAGAGAAGGACCTGTCCTTACATGGGTGACAGGCTGATGCTGAAGCCTGTGGTTAGATCCCAGAGGCCAGGCTTTCCCTTGCTACATTTGTGCTGTTGTTTAGAAAACATGGAAAAGAAATGATACAAAGTAACCATTTTTGTGGGCAGGAGAAAGCAAGGGGAACATAAGCATTTACTTAATTTTTCAGACCTGGAAATGTAACTAGGTCCTAGGATTCAAACCTTGGTTCTCCGTCCTTATCAGTCTTTATGTTGGGGTGAATGAGCCCTCTGTGAAGAGCTTAAAGGTGCTCATGGAATATTGTTCCTCTGCTTTTTAGTGGTTAAATTCTCTTAACAAGCCTGAAATCTTAATTCAGTCTTTTACCAACCACCAAAAGAGTGAATTATAAATAATAGATTTTGTAACTTGGTAGTTTGAAATTTAATTTCAACAAAATAATTTCTGAGAAAGCATTTCAAGATTCCCCTACAAGGCTACCACATCATATGTGACAACATTGTCCTGACTTTAACTAAAAACAAACCAACAAACTCTTTTTTTTTTTATTATTTATTACTTGAGTATTTCCTTATATATTATTCGAGTGTTTATTCCCTTTCCCAGTTTCCGGGGCGAAACAATCCCCTCCCCCCGTCCCCTTTTTTATCGGTGTTCCCCTACCCACCCTCCCCCCATTGTCCCCTCCCCCCAACAGTCTAGTTCACTGGGGGGTTCAGTCTTAGCAGGACCCAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGATATTCATTGCTTACCTATGAGGCAGAGTCCAGGGTCCAGTCCATGTATAGTCTTTAGGTAGTGGCTTAGTCCCTGGAAGCTCTGGTTGCTTGGCGATTACAACAAACTCTTTAGTCTCTTCTGTTTTTTCATTTGCCTTTTTTGCAAATCCAAATTTAATTTTATAAACAGATATAGTCTGTTTTGCTGTTCTTGGAAAGAAATAAGATATTCTTTTTTATTAACGGAATTTGCATTCACCCCCAGCTGGCATTCCCAACAAGGGCACTGGGCACTGGCTTGTAGAGTGGCCTCCTGAGTACTTGGTATGGCAGTAAAAGCCAGTGCCTGAGAACCATCCCACCAGGCACCGTAGAGTTTATGTTTCTATGTTTACAGCAAGCTAACTAAGAGACTGGAAAATAAACATTTCTTTCTTTATTTGAGGAAAAACCCAGTCTTATCTGTGCATTGCATTTTGCAACAGAGACAGCATGGCTTCCCAAAGCAATCCTAGCAGGAAGGCCATGGATTTAGTGCCTGCATAAAGGCACTCTGCTTATTTTTATTTTTGCCTTCCCCACTATTGGCTGCAAAAGGACCACAAAGTGTTGTCAACTGGTCCCCCTGAAGGGACAAATCTGGCAGAAAAGATGGTCTTGCCTGCGTCTCTGGAAGTGTGAACTGTGCAGGGCTGCTGCAGCCCTCAGCAGCCCCTCTCCGCCCCCCTCAGAAGAAAACTGGAGATAAATGAATGGCAGAATAAATAATTTATGCTAATGAAATTACTGCAATTAGTAGTTCTACAATGACCCTTTTAAAAGCCACAGCTGTTAATGTCAGGAAGTGCTGTCACTACTGACCTTATCATAAGAGAAAGTGACAAATTGAGAATGCAGGGAAGACCAGTCATCAAAGAGGTCTGTTCTGGAACGATTAGAGTTTTCTGAAAAACAGTGTGAATTACACCCAGCTGCTCCCTGGCTCCGTGAGACTCCCATGCTGAGCCATTTTGTTAAGCCCGATAACAATAGTTATTTTGCCCCATTGAGACAAGTTGTGTCGGGCCACTTCCAGCTCTCCCGGAAGCCACTCTTTCCATCAGAGATTTACAAATGAAACTGTTGTTAAAAGGAGCATTCAGGGCTGCAGAGGAGCCTCCTCATAAGGATCATGGTTGGGCAGAAGCCAGGTTTTTTTTTTCCCCCTTTGTAAGGAGGTTACACTTGGCTGGGGAGGTGTTTGTCTGTATCCTAGGAAGGTATGTGTGAAAGTTCTTGTCAAAGCAAGACAGGACGGGAGCAGGCTTGTGCATAGTTATGTGGGATGGAGCCAGGCTCTTTTGAAAATAAAGTCCTCAGGGAAGTATGATGCCTGTGACATTTATAGACACTCATAAATTTTATTTTCTGAGTCCATTAATTGCTAACACTCAAGCATCTTGGATCCCCTGGAATCCAATACAAGTTTTGTGACCCTGAGTTTTGCTTGGAATACACATTCTTTCAATGACTAGCGAGACAGATTTGTAATCTATCCAACCGTGCACTTTATGTGAAGGTTTTACCTACGTTTGGGGTTCGCTGTGAGGTTAGGAATCTGCGTATTTAAGGACACGGAAGAGGAACAGTCCGCTGTTCACTTTGCAGTGCTGTTCACACGCACTTCTGGTTGCAATATTGATGGTCCAGGTTTGAAGCGTTTAACTGCATCATCGGCCACTTGTGTGCAATTTTCCTGAAGCTGCCTGAGCGTTATTGACAACACTTTGGTAAATTATGTGTGACTTTCCAAAGAGTTGGTGTAGCTCATTTAATTCATATTAATTGATTTTTAGGCTTCCCTTGATTAATTGAACCAGGTTCATCTTGTACAGAATGCAATAAATAATCATTAGAATGAGGGAGATGTGGCTGTACAAATTAAAAAGTTAACTAGTCCAGAAGTCACAGAGGACACACGGAAGGGACAGCAGACGATCTGCAGGGACTCTGTGTAGGGTGGAGGGGATGAAGGGGTGGAGTGGGAGGGGGAGGGGTGGAAGTGGAGGGGGGAGGGGTGGGAGGTGAGGAGGGGAAGGGGTGAGGAGGGTTGGTGGGTAGGGTTGGGAGGGGTGGGAGGAATTCAGGGGAATTCCTTTGTGTTTGTTTTATTGTTGATGTTCACTTCTCCAGATAAGAATAGAAATGACTATCATATTTTCCCCTCAGAATGAGTGGTTTGGATAGTTTGCCCACCCCTTCAGTTTGAGATGGGTTCCCATAAAGATCTTTTTTCTCTACTTGTTTTGTGCCCCCCACTTTGGAGTGATTATTTTTGCCTAAAGTTCAGCTTGAAAATGGCATCTCCCTCCCTCAAAAGCCTCCCTCCAAATACTGTCATGCGTTCTTTTCTTTCCTTTTCTTCCTATGCACTTGATAGGTAAAGATCAAGTTGTGAAGATTGGGACTTAGTCTTTTCTGTTGGCTTCTGGGTTTTGGTTGAGACCCACACAAAAACATCCTTTGTCCTCCGTAGCACAATGGTGAGGAAGGCCAAGCGCTTCCCAGTTATCCCCCAAGTACTGTGAGTGTCTCACAAAGATGAAGTAAAATTTCCTACTTCTACTGCAATTCTTCCCGGCTTAAAAAAATACTGTATAATTTTGATGTGTGTGGCTTTTTTCCTTTTATTTTTTAAATTATATTTTCGTCTTGAAAGGATTTCGTGAGAAATGCGCTGTCTATGTTTCAG
Seq C2 exon
CCACAGCACAAAGATTCTATCAGCCTTTTCATGGCGTATGTTCACACCAGTGTAAAGGAAGTAAGTGCCTGGTACTACCAGAACGAGAGGAGGTACAACTACACCACCCCAAGGAGTTTCTTAGAACAAATATCACTGTTTAAGAGCCTGCTGAAGAAGAAGCGAGGAGAGGTGCAGCGGAAGAAGGAGCACCTGGGGAATGGAATCCAGAAGCTGCAGACCACGGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
NA
C2:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]