RnoINT0048716 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145785275-145786658:-
Coord C1 exon
chr6:145786518-145786658
Coord A exon
chr6:145785523-145786517
Coord C2 exon
chr6:145785275-145785522
Length
995 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
AACCGTTGTTTCTGCCACAGGTG
3' ss Score
9.47
Exon sequences
Seq C1 exon
CAATCATGCAGACCATGGCTCGAAAAAATGAGTGGCCACTGGACAGAATGTGTTTGACTATTGATGTCACTAAGAAAACGAAGGAAGATTATGGCCACCCCCCCAGAGAAGGTGCATATCTTCATGGGCTCCACCTGGAAG
Seq A exon
GTACAACCCCTAAGGAATGCACTTGGAACTGACTTAGTAACAAGCTGGTCCCTGTCCTTCCAATATCTCCTGAGATGATCATCTTGTGTTGACTGTACTTCTTCCTCCTCCCCTTCAGACAATTTAAACATTCAAGTGTATATGTAATGCAAGCCAAACCCGTGTGGCACTCGGGGTGATGGCTGTCACTTTAAACTGCACGTACATCATCAGCTAGGGTTAAAAATTCAAAACCTAAGTCCCACATGTAATCCGTAGTATTTTGCTTTTCACTGCCATCAGTTCAAAAATCATGCCCTCTGCTTTTAAACTTTTTGTGTACAGAGGTCAAAGGATAACTTTTAAGAGCTAGCTCTTTCTTTCCATCTTGTTTTTGAAGCTGCCATTTCCTCCAGACCACATACGCCAGGCTAGCCCGCAAGATCGACCTTCCCAGAGTACAGGCACCACACATGTATTTCCACATCTTGCTTTCAATATGGACTCTGGGGATCAAACTTAGGTGGTCAAGTTGCCAACACCTTTTACCCACTGAGCCTTCTTGGCAGCCCCTGCCCTCTACTTTCTAAAAGCTCTCAGTAAATCTACTCTATAATATCCTGCTCCTGGGTGTCTCTAATCCCGAAGGAGTGTCAGCTGATGCTGCATAGCTCTATCTGTGCACTTACACCCCAGGACACCTCACCTGCCGCACACCTCACACTGAAGCAAATGCCACAGTTCAGAAATCTCAAGGCTGGGTAGGAAAGGACCGGAATGAACTTGTTCCAAGCTTGGTAAGTGCAGTGGGAAAGGAGGTTAGAGAGTTGTATGTTTCTTTCATGAGTTTGAATTTGTCAGAAATTTGATCTTAGCGGTTAAACCATTGAACATCTCAACCACACAAGGATGCCACAGAAGGATGACAACATGGTAAAAGTGGAGCATTTATTGCATCAAACGATTAGAGCATCAGTGCCAGCATGCAAGTTACGCAACCGTTGTTTCTGCCACAG
Seq C2 exon
GTGCCAGGTGGGACATCCAGTCAGGAGCCCTTGTTGATGCCCGTCTTAAGGAGTTAACATCCACGATGCCAGTCATCTTCGCCAAAGCCATACCCGCAGACAGACAAGAAGTTAAGCATGCCTATGAGTGCCCCGTTTACAAAACCAAAGCGAGAGGCCTCACCTACGTGTGGACGTTCAGGCTAAGGAGCAAAGACAGGATAGCTAAGTGGGTCCTGGCAGGTGTAGCTCTACTACTAGAAGCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:88
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(11.4=96.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGCCACTGGACAGAATG
R:
AGTAGAGCTACACCTGCCAGG
Band lengths:
347-1342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]