HsaINT1011357 @ hg38
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21899980-21901839:+
Coord C1 exon
chr7:21899980-21900120
Coord A exon
chr7:21900121-21901006
Coord C2 exon
chr7:21901007-21901839
Length
886 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
CCGCTGTGTTTTTGCCATAGGCG
3' ss Score
10.21
Exon sequences
Seq C1 exon
CAATCATGCAGACGATGGCTCGAAAAAATGAGTGGCCCCTGGATAAAACGCGCTTGACTGCTGATGTTACCAAAAAAACAAAGGAAGATTATGGACACCCGCCAAGGGAAGGTGCATACCTCCACGGACTCTTCATGGAGG
Seq A exon
GTAAGACACCCCAAGGGGTAAGTGGGGAACCTTTTCTTACTCAGGTTCAGATCAGTGTTTGTCCTCTGCTTACTGTTTCTCAGCATCTCCTCACTCACACAGTAACCTTATGCTAGTCATTATCTCATTTCTTCCTCTTAAATAATTTAAGTGCTGGGATGTGTGTCCACTGTGAACCAAACTGTAATATTTGGGGTGATGGCTATCACTTAAATTTTGCACATATATCTGGATGTTAATGCCACTGAATAACATCATTAGACTTAGACTGAATTTACATTCTTTTTGCTTTTCAATATAATCATTTCAAAATCTTTCTTCTATTGTTTAAAAACTGTCAGTAAATTTGCTCTAATGTTTTACTACAAGACTTCTCCAAGCCTGGAAGATGCTACTGCGTAGGGTGAATCTCTAAGAGGGGGTTAGACTATGCAATATTTTCCAAATTTATCTGGCCATGCATTTATTCCACAGGACACTTAGTCCCTACCAAGATGTTCCTTTTTCAGTTTAAAGCAAGTGCCACAAGTTCTGGTGTAAAAGAATAAGGTGCGACGGGGAGGAAATGTGGTGAACTGGAGATTTTTAAAGGGAGGGCAAACTAGTTCAGTGTATGTGAATTCTCTTAGAATCCCATTTCATAAAATCAGCTTACTTCCACAGGAAAGTTTAACCACTACGCATGGAAGCAAAGCGGTGCCTCCGCTGCAGGCAGGGTAACCTACCTTTCAAAGCTCAGTCCGGCCAGCTCAGTAAAAATACCACTGACAAGCAAAAATATGACAAAACCAGAATGTTGAATGTTTATTGCATCAAACAACTTACTTGATCATTATCATTAGTAGCAAGCTGCCACACAATTGCAACCGCTGTGTTTTTGCCATAG
Seq C2 exon
GCGCCCGCTGGGACACCCAAGCAGGAACCATTGTTGAAGCCCGTCTCAAGGAGCTGGCATGCCCTATGCCGGTCATCTTTGCAAAAGCCACCCCCGTGGACAGACAAGAAACCAAACAGACCTACGAGTGCCCTGTGTATAGAACCAAACTGAGAGGCCCCAGCTACATCTGGACCTTCAGGCTGAAGAGCGAAGAGAAGACTGCAAAATGGGTTCTGGCTGGAGTGGCTCTGCTTCTAGAAGCGTAAGGTAACACTGGCATTCCTCTAGCCTCTGCTGGAGTGCAGTGAGGATTTTCTAGCATGTTGCTGCACTGTTCCCATGCACATTATTCTAACTTTTTAGTAACTCACACGTGCATTCTTTTTTCAACGCTATCCTTAGAGTGAAAGTCAGAAAAAAATACTAGAAACTAACTCAGGGCTGAGCGTGGTGGCACACGACTGTAATCCCAGTTACTCAGGAGGTAGGAGAATCACTTGAACCTAGGAGGCAAAGGTTGCAGTGAGCCGAGGTTGCACCACTGCACTCCCTCCTGGGCAACAGAACAAGACTCCATCTCAAAAAAAAAAAAGTACATCATAAAAGTACATCATATGTGAACATGCAAAAGCAATGCAGCCGGAAAGAACGGAGATTTTAATTTTTAACAAACAACAAATTAAATTATTAGCCCTTAAACTCTTTCAAAATATAAAAGCAGCAGGCCCCAGGTGAGTCCTGAAGGAAGAGGCTAGCACTCTGTAAGGCCTCCAGTGTCCAGTGTCTACAATGTTGATGGTCCCCTTTTGTTCAGTCAAGTTTTAATAAAAATAAAACTGTTCTACAGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877:ENST00000409508:81
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(11.4=96.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTATGGACACCCGCCAAGG
R:
AAATCCTCACTGCACTCCAGC
Band lengths:
351-1237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains