RnoINT0048886 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56086264-56086650:-
Coord C1 exon
chr10:56086547-56086650
Coord A exon
chr10:56086454-56086546
Coord C2 exon
chr10:56086264-56086453
Length
93 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGC
5' ss Score
6.32
3' ss Seq
GTCATGTCTTAAATCCTCAGATG
3' ss Score
7.96
Exon sequences
Seq C1 exon
GATGTGGATGACTGTATAATCCGCCAGACCAACACACAATTCCAGTATGGCTATGAGTACTTGGGGAACTCTGGTCGGCTGGTCATCACTCCCCTGACCGACAG
Seq A exon
GTCGGCTCTGGGGGCGAGCAGGGGTCCCAGGTGGGAGCTGCAGAGATGATAGGTCTCACAGTACTCTGACTGAGTCATGTCTTAAATCCTCAG
Seq C2 exon
ATGTTACATGACATTAACCACAGCACTGCACCTTCATCGTGGGGGCTCCCCCAAAGGCCCAGCAGGTACTGGAAAGACAGAAACTGTCAAGGACCTGGGCAAGGCGCTGGGTACATATGTCATCGTGGTCAACTGCTCTGAGGGCTTGGACTACAAGTCCATGGGAAGAATGTACTCTGGACTGGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=54.3)
A:
NA
C2:
PF127742=AAA_6=FE(27.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTGGGGAACTCTGGTCGG
R:
TGACATATGTACCCAGCGCCT
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]