RnoINT0048961 @ rn6
Intron Retention
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:81022479-81023888:+
Coord C1 exon
chr2:81022479-81022697
Coord A exon
chr2:81022698-81023825
Coord C2 exon
chr2:81023826-81023888
Length
1128 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGC
5' ss Score
5.85
3' ss Seq
TTGTGTTTAATCTGTGTCAGAAT
3' ss Score
5.63
Exon sequences
Seq C1 exon
GAATCCTATGCCCTCCTTAACAAGTATGGGCTTCTGGTAGCCAAGGAAGAGATGGACAAAGTGGACACTCTGCGCTATGCTTGGGAGAAGCTGCTGGCCCGCGCCAGTGATGTGCAGAATGAGTTAGGGGCTCTGCAGCCCAGTTTCCGGAAAGAGCTGATCAGCACAGTGGAGGTGTTCCTCCAAGACTGCCAGCAGTTTTACCTGGACTATGATTTG
Seq A exon
GTAGGCCTCTGCCTTTCTCTCCTTGAGAATTTAGGGGAGAACGCACGGGATTCACAAAGTGTACCTGTTTAAAAACTGCATGTTAAGTCCCATAAAATTTCATAGGAAGAGTAATCTTACATGAATGAACATATTTCTCTTTTTGAATTCGTCCCCTTAAGGGTTAATTCAGAATGTAATTTTATTATGCAGTGAGGATCAAAGAGTTCTGAAGTTGTTGCTTTGCTTCCTAGGCTATAGTATGGCCCTAGATCAAACTAAAATAAGAGCCAGAATGGTTTCAAAGTTTGCACAGAATAATACTACTTAAATACAAACACGATTCCCCCTTCTGTAGCACACATTAATTCTTCAAGCTCTGGGCCTCTGTGGGTGCTGACCTTCATACTGCAGACATGCATGGTGTGGTAGACAAGTCAAATGGAGCCTCGCTCCTCCGGTACCTGTGTTTTACTCATGTATATGGGTTTTAGCGCAAGAAGTGTGGCGTACATGTGCTGTGTGATGAGATTCATTTCTGACCAACTATAGCATGCAAGAGAGAGGAAGTTGTAAGTATGGGGTCAGTTTTGAATCTATTAGGTGGTGGCATTTCAAACGTCAAAGCTCACAAAGGCAGGAGTCCATGCATTCAGTTCCTGCCCAAGGAAACATAAAAGCAACTTATTATTTATTTGAGGTGTCATAATTCAGGAATACTGAACCGGACTGAGTAGGTTATGTTTCATTTTCCAGGTAGCCATTATAGTGGTAGAATCTGCAAGCTAATTATAATAGTGTTTACTTCAAAAGCAAAACTGTAAGCTTTCCCCAGAATGACCACTGATCCTTCCTTGCTGGTATCATCTAGGAGGTAACCAGTAAATGGTTAAAACCTTTTAAGATTTCTTCCCCTCTGGAAACTGTGGTATGTCCTCTGATTTTTAGTCTAGAGACATCATCCCAAATGGATTACATTCACAGTTCTCTTAGGAAATCAAGAATAAACAATAATCACAATAGCACACACATCATCCTATCATGTATACATCATGCATAGAAACTTTGATATCTCAGTATGTTGATCTCATGAAAATTTGTGTATGGATGCTTCACTTTGTCTCATGTTTTGTGTTTAATCTGTGTCAG
Seq C2 exon
AATGGTCCAATGGTAAGTGGACTGAAGCCCCAGGAAGCCAGCGACAGGCTTATTATATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363:ENSRNOT00000074689:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTATGCCCTCCTTAACAAGT
R:
CTGGAATATAATAAGCCTGTCGC
Band lengths:
279-1407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]