GgaINT0093165 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78537465-78538426:+
Coord C1 exon
chr2:78537465-78537683
Coord A exon
chr2:78537684-78538363
Coord C2 exon
chr2:78538364-78538426
Length
680 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCTAATTCCATTTTTTTCAGAGT
3' ss Score
8.26
Exon sequences
Seq C1 exon
GAATCCTATGCTATATTAAACAAGTATGATCTCCTTGTGACCAAGGAAGAGTCAGAGAAGGTGGATACTTTGCACTACACTTGGGAAAAGCTGCTGTTCCGAGCAAATGAAGTGCAGAATGAGCTCATTGCTTTGCAGCCAAAGTTCAGAAGAGAGCTAATAAGCTCTCTGAAGACTTTTACTGAAGATTGTGCACAGTTCTGTTCAGATTATGAACAG
Seq A exon
GTAAGGGTTTGTGATATTGGGTTAGAGGAGCTTTTGAAGAGCAGTGGAAGCGTGGAAAGATTGTAGAGTTGACTAAATAGTAGGATGTTCCTCTACTATCTGAAAACTATGCTTATTCTTGTTAATGTGATAGCTGAGTTTCAATGCAGGACAAGATTAGGTTATTTTTTGTGTGTGACTGAAATTTATGCTGGTAATCAACACTAAAAGGTTGGAGACACGTTAAGTTCCTAATACATAGCTTGTTACCATGTGCAAATATAAAGGTTGGGATTTAAGAGAAATTAAATTAGAATGTAAGTAGAGATTTCTGGCACTGAATGTTAATACAAATGACTTCAACTCTTATATTCCTTCTCAGCTGAGTACGTGTCAAGCCAAACCAGTCTTTTAACTAATACTTACTTATTCTTGAAAAAGGAGCTACTACTACCTTTTCTAGTACTGCCTGCATTTTCTAGTATTAACAAAACTTCTGTATTAAAAGAAAAATGATTTTTTTTTTAATAAAGTGGTCTTTTTAGTAATTTTGTAATCTGTCTTATCAGCTCTTATCTGGTATAAGCATGAAGTCTTGCAACACCAAAAATGTTTGCATTTCAAATTAGCATTGTTGTTTAATTTGATGTCCCCGCCCCCCAGCCCTCTAAACTCACTCACTCTAATTCCATTTTTTTCAG
Seq C2 exon
AGTGGGCCGCTAGTGGTTGGTTTAGAGCCTCAGGAAGCCAGTGACAGGCTTACCATGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTATGATCTCCTTGTGACCA
R:
TGAAACATGGTAAGCCTGTCACT
Band lengths:
262-942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]