MmuINT1008831 @ mm10
Intron Retention
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28293576-28294980:+
Coord C1 exon
chr15:28293576-28293794
Coord A exon
chr15:28293795-28294917
Coord C2 exon
chr15:28294918-28294980
Length
1123 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGG
5' ss Score
5.53
3' ss Seq
TTATATTTAATCTGCATCAGAAT
3' ss Score
4.21
Exon sequences
Seq C1 exon
GAATCCTATGCCCTCCTTAACAAGTATGGACTTCTGGTAGCCAAGGAAGAGATGGACAAAGTGGACACTTTGCGCTATGCTTGGGAGAAGCTGCTGGCCCGGGCCAGTGATGTTCAGAATGAGTTAGGCGCTCTGCAGCCCAGTTTCCGGAAAGAGCTCATCAGCACAGTGGAGGTGTTCCTCCAAGACTGCCAGCAGTTTTACCTGGACTATGATTTG
Seq A exon
GTATGGCTCTGACTTTCTCTCTGTGAGAATTTAGGGGAGAACAGATGGGATTCACAAAATGTCCCTGTTTAAAAATTTGTATGTTAAATTCCATAAAATTTCATAGGAAGAGTAATCGTACATTTATGTGGGTAAATATATTTCTCTCTTTGGATTCCTCCCCTTAAGAGTTAATTCAGAATATATCACGAAGTGAGGGATGAAAGTTGTTAGGTTGCTTCCTGGGCTCTAGTGTGCCCCTGTATCAAATTAAAATAAGAACCAGAATGGTTTCTAAGTTTGTGTAGAATGATACTATTTAAATGAAAGCATGGTTCCCCTTTTTCCATAGCACACATAAATTCTTCAAACTCTCAGCCTGTGTAGGTGCTGACCTTTCTACTGCAAACATGCATAGTGTGGTAGACAAGGCAAATGGAGCCATGTTCCTCCGGTATCCATAATCTACTTATGTATATGGGTTTTTTTTTTGTATATAGGTTTTAGTGCAAGAACTGTGGTGTAAATATATAATGAGATCCATTTCTGACCAACTGTCACACGCAACAGTAAGGAAGCATGTGAGTGTCGGGTCAGTTTTGAATCTATTAGGTGGCGACATTTCAAACTGGAAAGGTCATAAAGGCAGGAGGCTATGCACTTAACTCATGCCCAAGGAAACAAAGAGCAACTTAGTTGAGGTGTCATAATTTAGGAACATTGAACTGGACTGCATCGACTATGTTTCATTTTCCAGAGAGCTGTTAGAGTGGTAGACTCTGCAAGCTAATCACAGTAGTGCTTTACTTCAGAACCAGAACTGTAAGCTTTCCCCAGAACGGCCACTAAGCCTTCCTTGTCGGTGTCATCTAGGAGGTAAACAATAAATGGTTAAAAACTTGCAAGATTTCCTAACCTCTGGAAACTGTGGTATGCCCTCAGCTTTTCAGTCTAGAAACATCTTCCCAAGTGGATTACAGTCAGAGTTCCTTTTGGAAATTAAAGATAAACAACATCAATAAACACAATGTCCTATCATGTATACATCATGCGTGGAAATTTTGATACCCCAGTATGTTGATCTCATGAAATTTGTGTACGGATGCTTCACTTTGTCTTCTGTCTTATATTTAATCTGCATCAG
Seq C2 exon
AATGGTCCGATGGCAAGTGGATTGAAGCCCCAGGAAGCCAGCGGCAGGCTTATTATATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262:ENSMUST00000067048:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTATGCCCTCCTTAACAAGT
R:
TGGAATATAATAAGCCTGCCGC
Band lengths:
278-1401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types