HsaINT0049752 @ hg19
Intron Retention
Gene
ENSG00000039139 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:2950]
Coordinates
chr5:13866329-13868101:-
Coord C1 exon
chr5:13867883-13868101
Coord A exon
chr5:13866392-13867882
Coord C2 exon
chr5:13866329-13866391
Length
1491 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
TTTTTTTACTTTTTGTTCAGAAT
3' ss Score
7.97
Exon sequences
Seq C1 exon
GAATCTTATGCCCTGCTTAACAGATATGGACTTCTGATAGCAAGGGAAGAGATAGACAAAGTTGATACACTGCACTATGCTTGGGAGAAGCTGCTGGCACGTGCTGGCGAAGTCCAGAATAAATTAGTCTCACTGCAGCCCAGTTTCAAGAAAGAGCTTATTAGTGCTGTGGAGGTATTCCTCCAAGATTGTCACCAGTTTTATCTGGACTATGATTTG
Seq A exon
GTATGTCTCTGGCTTTCTCTGTGTGCGTTTTCGGGGATGAGTGAATACAACATGCAAAATGTAGTTGTCTAAAAATTATGGGTAAATTTCTGTGAAACTTCCTAGGAATTCCCAGGGAATGGGAATTTTATTTTCATGAGAGAAAAACATTTTTTTTCACAATTCTTTCCCCTTAGAGTTTCTATTAGTCTGTTTTCACACTGCTATAAAGAACTGCTCGAGACTGGGTAATTTAGAAAGGAGAGAGGTTTAATTGACTCACAGTTCAGCATGGCTTGGGAGGCCTCACGAAACTTACAATCATGGTGGAAGGCAAAGGGGAAGCAAGGCACCTTCTTCACAAGGCAACAGGAAGGAGAATGCTGAGCGAAGAGGGAAGAGCTCCTTTTAAAACCATCGGATCTCATGAGAACTCACTACTGAGAGAACAGCATGGGGAAAACCGCTCCCATGATTCAGTTACCTCCACCTAGTCTCTCCCTTGAGACGTGGGGATTATGGAGATTATGGGGATTACAATTCAAGATGAGATTTGGGTGGGGATGGAAAGCCTAACCAAATCGGATTTCATACATAATAATTTCAACAGAAAATGATAAATTTAAAAGGGCTAACAGTGTATAATTTGGTCTGTTACTGAAGTTGTTTGGTAGCATTCTAAATTTGTGTAGAAAAGTACTATTCGCATGCAGTTATAATTGTCCTCCTTTCCACAGCGTTCCTTGGTTACACAAATAACACAGAGCTCAGCAATTGCCGGGCGCTGTCCTTGGTGCTGACTACACAGTAGTGGATAAGACAGATCAAGCCTTGCCCCCACGGAGTCCATATTTTAATTATCCATATAGGTTTAAGTACTGAATCTTCTAATGTAAATATGTTGTGTAATGAGACCCATCTCCAGGCAATTATAATATGCTGGAGAAGGGAAATATATAGAGTTTAGGGTAAAATTTGTACCCATTAACTAGTAGCACAATAAACCACAAAATTAATCAAGTTAGAAGATTGGACCCATGTACCAACGCCATGGATGAAGAAGCACAGAAATCCACATATTTAAGATTTTCTAATGTTGGAAAATCTGATTGGAATGTTAAGATTATAGGCCACTTTACAAGTGGGTATTAGAATGATAAAAATCTATGAGTTATATGATATTAGCATTTAGCTGAAAAGCAGACTTTATATGTGCTTCTTATAGAACAGGCATTGACTCCTCTTTCCCTGTGTTACCTAAGAAATGAATAATACATATTTTTAATCTTAAAAGTTTCTTGACTAAGGGAAGTTCTGGCATTAATTTGGCTTTTTTAGACTAGAAACATATGTCTAAATGAATCACTTTGTGAGGCCCTTTTTTTCTAACAAATAAAAATGAAGTTTCCTATCATGCATGAAACCTAACTTTAATATTTAAATATGGATTGAGTTCATGAAATTTATATGCAAACACTTCCTTCTATTTTTCTTTTTTTACTTTTTGTTCAG
Seq C2 exon
AATGGTCCAATGGCTAGCGGCTTGAAGCCCCAGGAAGCCAGTGACAGGCTTATCATGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-DNAH5:NM_001369:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCTTATGCCCTGCTTAACAG
R:
AACATGATAAGCCTGTCACTGGC
Band lengths:
278-1769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)