BtaINT0050563 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59357156-59358763:+
Coord C1 exon
chr20:59357156-59357374
Coord A exon
chr20:59357375-59358700
Coord C2 exon
chr20:59358701-59358763
Length
1326 bp
Sequences
Splice sites
5' ss Seq
GTGGTACGA
5' ss Score
5.95
3' ss Seq
TTTTAAACTGTTTGTTTCAGAAT
3' ss Score
8.83
Exon sequences
Seq C1 exon
GAATCCTATACTCTGCTTAACAAATATGGGCTTCTGATAGCAAAGGAAGAGATGGACAAAGTGGATGCCCTGCGTTACTCTTGGGAGAAGCTTCTGGCACGTGCCAGTGAAGTTCAGAATGAACTAGTCTCACTACAACCCGGTTTCAGGAAAGAGCTTATTGGTACCGTGGAGGTTTTCCTCCAAGACTGTCACCAGTTCTATCAGGACTATGATGTG
Seq A exon
GTACGACTGTATTTTTGGGGAAGAGTGAATACAGCATACAAAATGTTGATTAAAGCTTACATGTCAAATTTAATGAAATCCCTCTAGAAATAGAAATTTTATTTTTATGAGACCAAAGGTATTTCCCTTTCACAATCCTTTCCCCTTTGATTTCATCCAGGATAATTTCAACAGTAAATGGAAATTAAAAAGTGCTGTTTGTATCATTGGTCTCTTACTAAAGTGTTTGGTAGCATTCTAGATTTTTGTTGACAAATATTACTCAATTATGGTTATCGTGATCATCCTTCTCACAGCATTCATCATTCTGCAAATATTGCAGAGTTGCCCTTGGTGCTGAAGACACAAAAGTGGACAAAACAGATTGAGTCCATATTTTAACTGTATGTATATGAGTTTTGGTGCAGAATCTTCAACTGGGAATACGTTGTTCAAGGAGACTTATTTCCAACCAATTATAATGTGCTGCAGAGGGGAAATGTGTAAAGTATAGGGTAAAATATTTATTAATCAGTAACACACCAAAATGAATGAAGTTAGGAGACTGGATTCATGCACCAGCTTCATGGTTGAGGAAGCACAGACATGCAGCTTTTCTAAGGTGGCCTAATGTAGGAAAACCTGATTAGACTGTTAATACTACAAGTCACTTTAGACATAGGTGTTAGGGTGGTGAGCTTTGTAGGTTGTGTGGCATTAGTGGTTTAGTTCAAACCAGACACTGTGCTTCTTACAATTATTGACCGTTCTTTGTCTGTGTCGCCTAGTAGATGAATACCACGTATTTTTATTTTTTTAAAATATAAATTTATTTATTTTAATTGGAGGCTAATTACTTTACAATATTGTATTGGTTTTGCCATACATCAACATGAATCCGCCATGAGTGTATACGTGTTCCCCATCCTGAACCCTCTCCTACCTCCTTCCCCATACCATCCCTCTGGGTCATCCCAGTGCACCAACCCCAAGCATCCTATATCCTGCATCGAACCTGAACTGGCGATTCATTTCTTACATGATATTATACATGTTTCAATGCCATTCTCCCAAATCATCCCACCCTCTCCGTATTTTTAATTTTCAAAATTTCTTGACATATAAAAGTTCTGAAATTAACTTGGCTTTTTTGGCCTTGAAAATATTTCCAAATGAGTCACTTTTCTGGGTCCTTTTTTTTTTTTTTTTTTACAAATAAAAAGCTACATTTCCTATCCTATATGTGACATGCATGAAAACAAAATTTGATATTCAGATACATTGAGCTTATGAAATTTGTATGCAAATACTTCATTTTATCTTATCTTTTTAAACTGTTTGTTTCAG
Seq C2 exon
AATGGTCCAATGGCTAGTGGCCTGAAACCCCAGGAAGCCAGTGATAGACTTATCATGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATACTCTGCTTAACAAATATGGG
R:
CTGAAACATGATAAGTCTATCACTGG
Band lengths:
278-1604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]