MmuINT0050908 @ mm9
Intron Retention
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28223331-28224735:+
Coord C1 exon
chr15:28223331-28223549
Coord A exon
chr15:28223550-28224672
Coord C2 exon
chr15:28224673-28224735
Length
1123 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGG
5' ss Score
5.53
3' ss Seq
TTATATTTAATCTGCATCAGAAT
3' ss Score
4.21
Exon sequences
Seq C1 exon
GAATCCTATGCCCTCCTTAACAAGTATGGACTTCTGGTAGCCAAGGAAGAGATGGACAAAGTGGACACTTTGCGCTATGCTTGGGAGAAGCTGCTGGCCCGGGCCAGTGATGTTCAGAATGAGTTAGGCGCTCTGCAGCCCAGTTTCCGGAAAGAGCTCATCAGCACAGTGGAGGTGTTCCTCCAAGACTGCCAGCAGTTTTACCTGGACTATGATTTG
Seq A exon
GTATGGCTCTGACTTTCTCTCTGTGAGAATTTAGGGGAGAACAGATGGGATTCACAAAATGTCCCTGTTTAAAAATTTGTATGTTAAATTCCATAAAATTTCATAGGAAGAGTAATCGTACATTTATGTGGGTAAATATATTTCTCTCTTTGGATTCCTCCCCTTAAGAGTTAATTCAGAATATATCACGAAGTGAGGGATGAAAGTTGTTAGGTTGCTTCCTGGGCTCTAGTGTGCCCCTGTATCAAATTAAAATAAGAACCAGAATGGTTTCTAAGTTTGTGTAGAATGATACTATTTAAATGAAAGCATGGTTCCCCTTTTTCCATAGCACACATAAATTCTTCAAACTCTCAGCCTGTGTAGGTGCTGACCTTTCTACTGCAAACATGCATAGTGTGGTAGACAAGGCAAATGGAGCCATGTTCCTCCGGTATCCATAATCTACTTATGTATATGGGTTTTTTTTTTGTATATAGGTTTTAGTGCAAGAACTGTGGTGTAAATATATAATGAGATCCATTTCTGACCAACTGTCACACGCAACAGTAAGGAAGCATGTGAGTGTCGGGTCAGTTTTGAATCTATTAGGTGGCGACATTTCAAACTGGAAAGGTCATAAAGGCAGGAGGCTATGCACTTAACTCATGCCCAAGGAAACAAAGAGCAACTTAGTTGAGGTGTCATAATTTAGGAACATTGAACTGGACTGCATCGACTATGTTTCATTTTCCAGAGAGCTGTTAGAGTGGTAGACTCTGCAAGCTAATCACAGTAGTGCTTTACTTCAGAACCAGAACTGTAAGCTTTCCCCAGAACGGCCACTAAGCCTTCCTTGTCGGTGTCATCTAGGAGGTAAACAATAAATGGTTAAAAACTTGCAAGATTTCCTAACCTCTGGAAACTGTGGTATGCCCTCAGCTTTTCAGTCTAGAAACATCTTCCCAAGTGGATTACAGTCAGAGTTCCTTTTGGAAATTAAAGATAAACAACATCAATAAACACAATGTCCTATCATGTATACATCATGCGTGGAAATTTTGATACCCCAGTATGTTGATCTCATGAAATTTGTGTACGGATGCTTCACTTTGTCTTCTGTCTTATATTTAATCTGCATCAG
Seq C2 exon
AATGGTCCGATGGCAAGTGGATTGAAGCCCCAGGAAGCCAGCGGCAGGCTTATTATATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-Dnahc5:NM_133365:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTATGCCCTCCTTAACAAGT
R:
TGGAATATAATAAGCCTGCCGC
Band lengths:
278-1401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: