GgaINT0093165 @ galGal4
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76631519-76632480:+
Coord C1 exon
chr2:76631519-76631737
Coord A exon
chr2:76631738-76632417
Coord C2 exon
chr2:76632418-76632480
Length
680 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCTAATTCCATTTTTTTCAGAGT
3' ss Score
8.26
Exon sequences
Seq C1 exon
GAATCCTATGCTATATTAAACAAGTATGATCTCCTTGTGACCAAGGAAGAGTCAGAGAAGGTGGATACTTTGCACTACACTTGGGAAAAGCTGCTGTTCCGAGCAAATGAAGTGCAGAATGAGCTCATTGCTTTGCAGCCAAAGTTCAGAAGAGAGCTAATAAGCTCTCTGAAGACTTTTACTGAAGATTGTGCACAGTTCTATTCAGATTATGAACAG
Seq A exon
GTAAGGGTTTGTGATATTGGGTTAGAGGAGCTTTTGAAGAGCAGTGGAAGCGTGGAAAGATTGTAGAGTTGACTAAATAGTAGGATGTTCCTCTACTATCTGAAAACTATGCTTATTCTTGTTAATGTGATAGCTGAGTTTCAATGCAGGACAAGATTAGGTTATTTTTTGTGTGTGACTGAAATTTATGCTGGTAATCAACACTAAAAGGTTGGAGACACGTTAAGTTCCTAATACATAGCTTGTTACCATGTGCAAATATAAAGGTTGGGATTTAAGAGAAATTAAATTAGAATGTAAGTAGAGATTTCTGGCACTGAATGTTAATACAAATGACTTCAACTCTTATATTCCTTCTCAGCTGAGTACGTGTCAAGCCAAACCAGTCTTTTAACTAATACTTACTTATTCTTGAAAAAGGAGCTACTACTACCTTTTCTAGTACTGCCTGCATTTTCTAGTATTAACAAAACTTCTGTATTAAAAGAAAAATGATTTTTTTTTTAATAAAGTGGTCTTTTTAGTAATTTTGTAATCTGTCTTATCAGCTCTTATCTGGTATAAGCATGAAGTCTTGCAACACCAAAAATGTTTGCATTTCAAATTAGCATTGTTGTTTAATTTGATGTCCCCGCCCCCCAGCCCTCTAAACTCACTCACTCTAATTCCATTTTTTTCAG
Seq C2 exon
AGTGGGCCGCTAGTGGTTGGTTTAGAGCCTCAGGAAGCCAGTGACAGGCTTACCATGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021223:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTATGATCTCCTTGTGACCA
R:
TGAAACATGGTAAGCCTGTCACT
Band lengths:
262-942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]