RnoINT0049100 @ rn6
Intron Retention
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60213325-60214990:-
Coord C1 exon
chr9:60214835-60214990
Coord A exon
chr9:60213494-60214834
Coord C2 exon
chr9:60213325-60213493
Length
1341 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TAATCTCTTTTCTTTCTTAGATT
3' ss Score
9.33
Exon sequences
Seq C1 exon
AATTTTCTTTTAAATCAACTCAATAAGGACATCTACAAACCTCTTATAGTTAACTTCTCAGCCCAAACTACAGCAGCCCAAACTCAGAATATCATCATGTCAAAACTGGACAAAAGAAGAAAAGGAGTTTTTGGCCCTCCTTTAGGCAAGAGAATG
Seq A exon
GTAAGGGCTTTTCCCTACTGTTTGTTCTACCTCTAGTATAATTCTGGGCCGGCCATGTTCCTATTGCCACAGTCAGAACAAGGAAACCTAGTAAGCTAAAGACTGGCACCTTTGGTTTATTTTTTGGTTTTGTTTTAAATGACCTGGTATGTGTGTGTGTGTGTGTGTATGTGACAGTGCATGTGTTGGGATAAAAAGACAACGTTTGGAAATGATTCTCTCCCTCAACCATGCAGTATGGAGATCAAACCCAGGACATTAATCCTGACAGTGGGTATACTTACCCTCTGAGATGTCTTTCTATCTCATTGGCCCTTTTCTTTTAAATGAAAAAAAATTTTTAAATTTTCCGAGGCTGGGAATATAACATAACAAGTAAAGTTCTTAACTAGCACGCACAGAGCCCTGGGGTCGATTACCAGATAGTGGCAAAAGCCTGTGATGCCAGTTGTCAAGAGATGGAGGCAGGGCTCTCAGAAATTCAAGGTCATTCCTGGATACATAATGAGCTCAAGGCCAGCCTTGGATACATAAATCCTTGCGTCGATAAAGAAAAAAGAAAAACACAAAAGAAAAGAAAAGAAATTTCTTGAAACAGGTCACATTTATTTTAAAAAGATCCTATAACTGGTCATATTTGTATGACAATGAACATCTTGGTGTTATTTTTAAGTGCTTGCCCTTTGATATTTTTAAGCTTCTGCCTTTTAAATTGAAAACAAAATATTCATATGAAAAATTAGACTTCAATTCCTGTACTAACACCCTTAGCATGTTTAATGCTTTAAGAACTCTCTCTACAAAATGACTTATTTATGCTTCTCTGCAAGGAACTCCCTTCTCAACTAAGCCTTCATCACTCAAAGGCTCTACTCACCTAACAGTCACCCCTTTCTTTGTGAGTTAATAATTTAGAGTGTTTCACAAGGGAAAAAGTACAGTGAACCACAGATGGACTTGAACCACCAACCTACAAATATTAGCAATGAGGAGGGCTCCTTATTTCTGTAGGAACCTAAAGATAGTAAAGAAACAATCACCTCTCAGGTATATATCCTTTGGCTGTAAGAATATAGACGAACACTTTGTCAACATCATTTGTATAGTAGGGTTCTATGCCAACCCTACTATTTTCTATTTTGTCCTTTTATTTCATGTTTTTCTTTTGGAGACAGTGCCTCACTAGTGTAGCCCAAGGTAGCCTGGAACTCACTATATAGACCAAGGCTAGCATTAGACTCAGAGATCTCCTGCCTCTACCTCGCAAGTGCAGGGATTGTAGGCATGTGCCACCATAAGAGGCTTAGGTGCTAATATTCGATAATCTCTTTTCTTTCTTAG
Seq C2 exon
ATTGTCTTTGTAGACGACGTGAATATGCCTGCTCGAGAGGTCTATGGGGCTCAGCCACCCATTGAGTTACTTAGACAGTGGTTAGATCATTGGAATTGGTACGACCTCAAAGATTGCTCTATGATTAAACTGGTGGACATCCAGATCATGTGTGCTATGGGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984:ENSRNOT00000092162:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.6=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAATAAGGACATCTACAAACCT
R:
GGCCCATAGCACACATGATCT
Band lengths:
302-1643
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]