BtaINT0050655 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84882145-84883213:-
Coord C1 exon
chr2:84883058-84883213
Coord A exon
chr2:84882314-84883057
Coord C2 exon
chr2:84882145-84882313
Length
744 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
TTTTCTCCTTTCATTCTCAGGTT
3' ss Score
11.87
Exon sequences
Seq C1 exon
AATTTTCTTTTAAATCAACTCAATAAAGATATCTACAAGCCTTTGCTGATTAACTTCTCAGCACAAACTACAGCAGCTCAAACTCAAAATATTATCATGTCAAAACTGGACAAAAGAAGAAAGGGAGTTTTTGGTCCTCCTTTGGGCAAGAAAATG
Seq A exon
GTAATTACTCTCTGTTTTTATACATATAATATGGCACTTTCGCTATTCCTGGGCATTATTACATTCAGAACAAGGAAACCAGATATACTAGGACTTGACATCTTTCTGTAGTACAGTTTTTATTAATGTATCACAAATGTTGGTTAAGAAGTCTTCTTAAAAGTGTTTTTATATTGTATGTGCATTTGGCAACTTGACATTAAAAACAAGCAGTTGCCTTTTGAATTCAAAGTAGAATATTCACCTGGGAAATTATCTACCTTCCTAATTCTCTCATTAACATTTTTACTCAGCAGAGTCTTTGCTGCTTGCTCTCTAGGCCTTTAAATAACCAAGCTATCAATTGACTTTTCTGTGTTCCTCTGCCAAGAATACCCTTCTCAGCCTTACTCTTATCACTCAGAGTTTATAATCATTTGAAGATCACACCTTTCTCATTTATTTAATGTATCGAAGTTGTACAAGGAAAAAGAGAAGGCATATTGAGAAACAAGTTATATGAGAGGATTAATAAGTTCTAAACTGTTAACTATAAATGTGAGTAATAAGACTGTCTCCCTGTCATCCATGTTCCTTGGTAACATGGATGCTGAGAGATAGTCCTGATGTGCAAAGAAATCATCACTTCTCACTTATGCACTTCACAAAAAGGAAACTTATTCTTTGCCTGAACATTGTTTGCACCACAGGACACTATATCAAGATGCTAATGTTTTCTAATACCTTTTCTCCTTTCATTCTCAG
Seq C2 exon
GTTGTCTTTGTAGATGATGTCAATATGCCTGCTCGAGAGGTGTATGGCGCCCAGCCTCCCATCGAGTTACTTAGACAATGGTTAGATCACTGGAATTGGTATGACCTAAAAGACTGTTCTATGATTAAACTAGTGGACATTCAAATTATGTGTGCTATGGGACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784:ENSBTAT00000038364:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.6=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGCTGATTAACTTCTCAGC
R:
TGGAGGTCCCATAGCACACAT
Band lengths:
286-1030
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]