DreINT0058159 @ danRer10
Intron Retention
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25184924-25185564:-
Coord C1 exon
chr9:25185409-25185564
Coord A exon
chr9:25185093-25185408
Coord C2 exon
chr9:25184924-25185092
Length
316 bp
Sequences
Splice sites
5' ss Seq
ATGGTATAC
5' ss Score
2.73
3' ss Seq
CTTTTAATTATTTTGATCAGGTG
3' ss Score
7.05
Exon sequences
Seq C1 exon
GACTTTTTGCTGAATCGTCTGGAGAAGGATGTGTACAGTCCTCTGTTGATCAACTTCTCAGCACAAACAACAGCAGCACAGACCCAAAACATTATTATGTCAAAACTTGATAAAAGGAGGAAAGGAGTGTTTGGCCCTCCCCTGGGAAAGAAAATG
Seq A exon
GTATACCTTTAACATGTTTTCCTTGTTTTGCTTACGAATAAATCCATTTTTAATAGGCAATTATTATTTTGTCCATTTTAAAATCCACCATAACTATCAACTATGTTTAAAATTCTGACTGTAACATGAAAATGAGTTCTTAATTGCCTCTAATTTAGATGGAAAGCAAATAGATTCTTGATTCACCTGTTTTTAATCACCATATAAAATAGCACATTATCTACCAACATTGAAAATTACAGCATCAAATTGCATTAAAGTTCATGTTGAAAATGCTTTTAGTCTTTTTAATTGGTCTTTTAATTATTTTGATCAG
Seq C2 exon
GTGGTTTTTGTGGATGATGTGAATATGCCAGCAAGAGAGACGTATGGAGCCCAGCCTCCAGTGGAGCTTCTGCGGCAGTGGCTTGACCACTGGAACTGGTATGACATGAAGGACTGCTCCATGATCAACTTAGTGGACATCCAGATCATGTGTGCTATGGGTCCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165:ENSDART00000137131:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.6=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTTTGCTGAATCGTCTGGAGA
R:
CGGACCCATAGCACACATGAT
Band lengths:
320-636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]