GgaINT0050152 @ galGal4
Intron Retention
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9223861-9225264:-
Coord C1 exon
chr7:9225109-9225264
Coord A exon
chr7:9224030-9225108
Coord C2 exon
chr7:9223861-9224029
Length
1079 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
CCTTTGTTTTCCTTTTTCAGGTT
3' ss Score
13.8
Exon sequences
Seq C1 exon
AATTTCCTTTTAAATAATTTGAATAAAGAAGTCTACAAGCCACTGCTCATTAACTTTTCAGCACAAACTACGGCAGCTCAGACTCAGAATATTATAATGTCTAAGCTGGATAAAAGGAGAAAAGGAATTTTTGGGCCTCCTTTGGGGAAAAGAATG
Seq A exon
GTAATTGATGTATTTCTGTATGCGAGTGTTTAAAGGCAAACAAATATATGAATGTGTTATTTTTGCAACTGATTGCAACAAATATCAGGAAAGGTTGATAAACCCCTAGTTCTAGTTTTTCTCATTTACGCGCATGAGTTTCCAATCTCGTTTCTCTCTTTAACTAGTAATATGCATCTAATATTAGTCAACTGAAAAAATGATATCCTACAGATATGATATGAACAACAGTGAACAGCATTGCATACTTCCCCCTCCATATTTTGTGATATTGTGTTTTAGATAAGAGTTCTGTACGGATAAGGTGCTGCTGACAGCGTTATAACTCTTGAGTATTGTGGTTTTTGAGTTCTATGTAAATCTAATAGTGGAATTACCAAAGGTTTGTCAGTAGTTCTAGATCTGGATTTTTTGTTATGAGGACAATAAGAAGCTTGTTCACCCCTGTTGCTTATTTGCGTGGACATCTGTGAAGAGATACTCAGACAGAACTCTGGAGTGAAAAAAAAATGGATATAGAAACTCAGATAGGTTTCCATTCAAAGCCATCTCAGTTTCTTGCTCAGATTACAATTCTAAATAAGAAAAAGGCCCGTGATTTAACCTGTTTTCCTTTTGACCAAATTTCATCTCCATATCAATTAAAGAAAGAGAAGAAAAAGGTATGAAAGGCATAAATGCATTTCTGGGACTTGCATTATTTGAATTAGGTTAACTGTATGAAGATGCTTCTAGTGGCATATGCTTTATGAAATTTTCATGGCTCTTCTTGACTCCTGAATCTTTACAGGAGAAGACACATAAGTGGCACAGAAGGATTAAGTAGCAAGTACTATTTTGCCTTTTTTTATTAAATGCTCTCAGATACACGAAAAGAAATACAGATTCTCTCTCCTCTATAAGTATGTTTTGGAACGTCTTTAGAATTGGCATGGTTTCTTTTGTAGCTTTTTGTTTTTGTTTAACTTGGCAGCAAATCCAGTAAGAACTTTGTCATGATTCTCAAAAGATTGTACTTGTGTACTATTCCAATTCAACAAAAACAGTAAATACAAAATTCCTTTGTTTTCCTTTTTCAG
Seq C2 exon
GTTGTATTTGTAGATGATGTTAACATGCCAGCCCGAGAGGTCTATGGTGCTCAACCTCCTGTTGAGTTACTACGACAGTGGTTAGATCACTGGAATTGGTATGACCTTAAAGACTGCTCAATGATAAAACTTGTAGATATTCAGATTGTCTGTGCAATGGGACCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841:ENSGALT00000012727:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.6=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATAAAGAAGTCTACAAGCCACTGC
R:
GTGGTCCCATTGCACAGACAA
Band lengths:
302-1381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]