RnoINT0051263 @ rn6
Intron Retention
Gene
ENSRNOG00000056258 | Dsc1
Description
desmocollin 1 [Source:RGD Symbol;Acc:1310768]
Coordinates
chr18:11884837-11889830:-
Coord C1 exon
chr18:11889688-11889830
Coord A exon
chr18:11885050-11889687
Coord C2 exon
chr18:11884837-11885049
Length
4638 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCTCCTTTTATTTATCCTAGTTG
3' ss Score
7.72
Exon sequences
Seq C1 exon
GTATAAAATGGTAGGAGACGAAGATAACTGGTTTGAGATTAACGAAAGCACAGGAGACTTGAGAACCGTGAAAGTTCTAGACCGAGAGTCGAAGTTCGTGAAGAACAACCAGTACAATATTTCCGTGGTGGCGATGGATTCAG
Seq A exon
GTGAGTGCCATTTTCTAAAAGTGAAACGTGAATGTAGAATGTGACTGTGTCTAGGGCAAATTTTAGTCCAGACACTGTTTCCTCGAAGGTACCAATAATGTACAACGCAAAACGCTGTGTTGAGTGTAATGGCTCAGGGCACTGAGATCACCCATTTAGTCCCCTGTGTGCCCGCCTTGGGCAGAGCCACAAGAGAGTAAAAGACTGAAGTCTAACTTTTAGTACTGGTTATTTATTTCTGTTGAGGGATATCGTTTCCTCTCAGAATGCCTTGTCTGGGGCCTTTAGTTTTTTTAATTGTCCCGGTGAGGGTTACTATCACTATGATGAAACACCATGACAAAAGCAAGTTGGGCAGAAAAGGACTCATTTCATTCAGTTACGTTTAACAGTTCATCATCAAATGCAGTGAGGGAGGAAGTCACACAGGGCAGGAACCTGGAGGTGAGAATAGACGCCAAGGCCATGGAGAAGTGCTGCCATGGAGGAATGCTTGCTTAGCATGGCTTGCTCAGCCTGCTTTCTTATAGACTCAGGACCTCCAGCCCAGGGATGGCTCCACTCCTCATGGGCTGGGCTCTCCCACATCAACCACTAATTAGGAAACTGTTCCATAGGCTTGCCTACAGCCCAGTATTAGGGAGACATTTTCTGAACTGGAGTTCCCTCTTCTCAGATGACTCTAGCTTATGTCAAGTTGACATAAACACTAGCCAGGAAATTTACCTTACAGGTCTTTGCTTATATATGGCTTTTGGTTTCCTGTTTTTACAGGAGTTTTGTGTGTGCAGATGTGCATGTCTTTAAGTCTGTGTGTGTTTCTTGTACTTTTACTTTGGCTTCTTTTTTCTGCTTATTTGTCCTATTCTGTTTTGCTTTTATTATTATTATTATTATTATTATTATTATTATTGTTGTTGTTGTTGTTGTTGTTGTTATTTAGATGCCTGTTTGCTTTCTAAAGAGAGAAAAAATAAGGTATGGGTTTAGGAGAGAGGGGAAGTCGGAAGGAGTTGGGAAGAGCTGGGGGAGAGGAAACAGTAATCAGAATTTATTATATGAAAAAAATCTATTTTCAATTAAACAACAACCACAAACATTCTAGGACCTAGAGTGTCTCCTTCAAACACTGTCAACTGTGAAGTGATGATCTTAAAACTCTTGAAGTAAACTCCTGCCTACAGGAACCATATATAGTTTAAATAAACATATGTATATAAATGTGCTAACAATGTTTGCCAATGTACACATGTACTATTATGCAATACATTATATAAACCTAAAGTTAAAATAAGTAATAAAATATGAAAAGAAGTTATACTTTGATTATGTGCATACCCTTTAAGAGAAGTCCTCACAGAGATAAAAGAACATCATCTTGGGACTTTTCAGACTGAACTAATTCTTTTGCCTATTCGGTTAACTCAAGAAGGTGTCAACTGTTTTAAGATGTCTAAGTTGAACATGTAAAATGTATTGTCAGACAGTAACATTGGCTATGTCTGCACATTTCCTTAATTTGTTCAAGTTAATAACACAAACCCCCAGATATTGTTGGCTATATAGCCTATTTTAGCTACAATTTTTTAAAATTATATAAAAGTATGTGTGTGTGTATGTGTCTGTGTGTGTGCACATGAGCAAAGAGGCCATTGGTGACGGCTCCCCAAGGAACTGGAGTGGCAGGTGCTGTGAGCCACTTGATAGGGACGCTGGGACTTGAACTCGGATCCTCTGGAAGAGAAGTACACCCTCTTCACCACCAAGCCACCTCTCTGGCCTTGTTGATAGTTTTGAAGCAAGAGCTGGAGCTGCTGAAAGAGAGACAGACAAAAAGTTAACCAGGGAAGACGCCGGCGACTTCCTGTTTCTGCAGACAGGGCAAGCTGACTCATGCCCACTCTGCCCATTAAGGCTTCTCTCGCCTCTCAGCCCTGCTGCCTTTGGGATAGAAATACCGGGTTACATATCCCCTTCACAACCATGGAGACCAGGAGTTGCGGGGAGGTTTAGTCCTCCTAGTAATGAAAGCTTTGACGCTTTATATTCTAAGCATTAAAGAACCCACCTATCAGATAAAAATCATCTAGCTTTCAAAATCTGTGCTCCCTCTTAATGAGAATGTCATTACCAAGTGAACTACCTGCATATTACCTTTCTCTTTGATCCACACCTCAAACATACATTTCTTTTATAGAGTTATTTTACTATAAGTTCCAAAATTCTGTAGAATAACGGGTGGGGGATATTAGCTGAGAAACATATTAACTTAATATATTTTACAGTTCTGGGTGATGTGGGTTTTTTTTATGTTTGCTCTACCTATAAGTAAAAATGAAATCTAAATGTTTTACACATAATTATGATGTGAAAGAGGGCTCTCTGTCTGCTTACTTTTAGATGTTTAAATTCCAAGCACAGGATCATGGGAACTAGGAGTCTTGAGATGAGGATTTGATCTTTCTAAGAATGAAAGCTTTTCTGCTTTATATTCTAAGAGAATCTGTGGTATAAATTTTTTACCAGTAGAGAACACTTAGGCGTCTCTACACATTGAGAGACTCCAGAGGCTTTTGGGGTAAGGCACAAAGAGGGGAAGACTACAGAAATCCTGGAAATTCTTATTTAGAGAGGAGAAAATTACAAGAGCAAAATATAAGAAATTAACTTTGTTGCTTAGTACTGAAAAATACTGAGGGTAAGCTTGGTAGGGTTAGTATAAAAGAGAGAAGCTTAGGCAAAACAATGTCCCAGAGTCATACGTAATCTAGCTTACGTCCTTGTATTTCTCCTGTGCGTCATTCTTGTCTGTCAGGCTAATCTCTCTGCTGTGTGTCTTGAGGACACTGTTTTATGCACCTTACTCCTAGAACATGAGAGTAGCAGCCATACCCTGAAGCTCATGTCCCTTAAATTATTCAAATGAATAGCAGTAACAGCTTCCGTGATTGTTCTCTGTTAGTCTTTCTTTGATTTGTAATACTGCAGTTTAAGCATTATTATATGCTGGAAATAATATGATAATTATTGTTTAGTGCTGTAACTCTGAAATTGTGCCTTCACTTTTTCTCATTCGTATTTTTTTCTTCTAAATTGGTTAAGAGCTCAATTTTTTTCCCATACCCACCCTGCCACCCTTCTGGTAAACTGTCCCTTTATCAGGCATGAAGATGAGAATTCGGTATATATCTGTTTAAGGCAGATCTTTAAAAGTGACATGGGTATGCGTATATGAGCTCCCGCATGCATGGTCTTTAGAAAGGTAGAAGGCTCTGGATCCCCTGGAGCTAGAGTTACAGGCCGAGCTGGGCTGATCTAAGACTTTCGCCACAGAGACCCTGATGAAAGGACAGAGGGGACCTAGTTCTGTGTCTTTGCCCAGGAACAGACTGGGTAAGATCCAGTCTACGGCTGGGTTCTGTGTCTCAAATGAGTTAAGGTTTCAATTCTTGAGAACTTTTTCCCCTCCTCCTCCACCACCACCATTAGCGAGACTGAAGCTCTCAGTCTCAAAGCCTCTATGTACTTAATTTCTGACACTTGAAGTATCCTATGCTCACCATGTGCTCTGTTAGCCTTCTGCTGAATTTGTCCCATCTCCCCTTATAAGCATATGTAAGATCCTTACTTCTCAATAGTCCTGCTTGGCATAACACATTGCTTGTGCAGTAACTCCCGAGCCCAGCTTTCCTATCTCTAACTTCTCTTCTCGTCTTCTCCCTTAGGATCCTTTCACTGAAGAAAGACCTGTTTGTCCATGTCACCTCACATGAATGTTAGAATCTAAAATGTGGTCTTGGCAAGAGCAGCAAGCACTCTTCCCTAATAAGTCCCAGCTAATGTGTCATGGTTAGACTTGCTGTTCCTCTGTGGTTTGAGAAGCTCATAAGCCTCCAGGATCAGGCAGTGAAATTAGCTACTGAGGATTTTACAGTTTTGAGGTGTACTTGATGCTTAGAACAACTGAGTTCAAACCATATAAAATACCTTCTTAGTTTTAGCCTCGGAACAAGTCTTAAAAGTCTCACTGTGTAGCCATCGTAGCAAAGCATTTTCTTATTTGAGTCCAAAAGGAACACACACAGTCTTGGGAGCTAATGAGTGTGCCACAACGTGAGAAGGAACAATGTGGAACCTTTCTAATCATAAAGAGCTCAACCCAGGTCTGACTTATAATAGAGTGAGCTTCGGGAGATGGGAAACATACAGTGATGACGACTACTGACTTTAGACGCTCTTTCTAGAAATGCTATGGATTTAGATTTTAGTTGGCACAAGTACTTCTCAGCTCTGTGGCTGGTACTCCCCACTTACTGACACGTATGAGTCGCCTAAATAGGAAATCTAAAGTAAGCTGTTGGACCAGACAGATGCATGGAGATGCCTCTTCTGATGTTCTACCATTTCCTGTAAATGGAAAATCACCCTTGAGTGTCCTAGAAATTTTCCCAAGTTTATTTTCAACTCTGTTTTGACTATTAGACTAATGTCAAGCATCTTCTGTTCTGTTTTTATCATCATGTCTCAAATGGAGCCTCTTACAGGAAAAACATTAAATGATAAATATTGGTTAAATGTAGACTTAAGTGAATCTCCATTTCCTTTGCCATCAGAGTGACCTCCTTTTATTTATCCTAG
Seq C2 exon
TTGGCCGATCTTGCACAGGAACACTGGTAGTCCTTCTGGAAGATTTTAATGACCACCCACCACAGATTGACAAGGACATAACCATTTGTCAGCAGGAAAAGGATTATGCCGTTTTGGAACCCGTAGATCTAGATGGGCCAGATAATGGTCCACCTTTCCAGTTCCTTCTGGATAATTCTTCCAGCAAACTTTGGACTCTAGAGTCACAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056258:ENSRNOT00000078207:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
NA
C2:
PF0002812=Cadherin=PD(14.0=18.1),PF0002812=Cadherin=PU(53.5=63.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]