RnoINT0051329 @ rn6
Intron Retention
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37241212-37246266:-
Coord C1 exon
chr11:37245991-37246266
Coord A exon
chr11:37241509-37245990
Coord C2 exon
chr11:37241212-37241508
Length
4482 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CTGTTTTTGTCTCCCTGCAGACG
3' ss Score
13.4
Exon sequences
Seq C1 exon
AGCCACTGAAAGCCACCATCAGTCCCAGAAAGGTTAAAAGCAGTGTGGGCAGCCAGGTCTCCTTGTCCTGCAGTGTGACAGGAAACGAAGACCAGGAGCTCTCCTGGTACAGAAATGGTGAAATCCTCAACCCTGGGAAAAACGTGAGGATCACAGGACTCAACCACGCGAACCTTATAATGGATCACATGGTCAAGAGTGATGGGGGCGCCTACCAGTGCTTTGTTCGCAAGGACAAGCTATCTGCTCAAGACTATGTCCAGGTGGTCCTTGAAG
Seq A exon
GTCAGTGGGCAACGTTGGAGGGTGAACAAACAGAATCCAGTAGAGCATGGGACAGGGAGAGGGCTATGCAGAGACACTCATGGGAGGAAATAGGTCACTACTCGTCTCTCTGTCTAGTGACTCTAGTCTCCCTAGATCAGCCAAGGGAAAGGCATTGCTCTGCTGAGAGAGGGTGGAGCAGTGTTATTGAGAATTATGGCTTGGGATTGTCTGAATTCTTCCTACTCATATTTAAAGTTATTTGCCAAAAATCAGCCTTTGAACCTAGAGCTATGGGTTCTACTGCCAATTCATAATTCTCTAGATGTATAAATGCAGCAATGCCTTGTTTGGGAGCTGTTGGATGCCTAAGTAGGATATTTGTTTGGGGTCTACCTGATAGATACATTGTGGGATGTTTAGGTGAGTCTCTAGCCTTAGCCCACTTGATGACAGCAGTAGCCCCTGTAAGTTATGATCACACACACACACACACACACACACACACACACACATGCATATATACAACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAATAACCTTAACTTTAATAGAATGTTTTTGGATGAAAATATGACTTATGGTTGGTGCCATTGTCTATAGCCTGGTCAAAATGTTCCCAGACTTAGGTGTGTGGAAAACTTGAGGAGTTGCCTTGGGGTAGAATAACATGATCTGTTTGCTTTTCTTAATTGGTTACTGAGTACTTCAATCTTCAAGTTCATCCATCACCAAGGGAATAGAGCTGTGACAGGTGACATTTAAGCAAGACATATATTTATCACCAGATAATTGAAATGGCTCCTGTCTGTGTATTTGTATGTCTTGATGGGAATTATATCATTAACTATCATTTAAAATCCATCCATTATCAATTGGTGAAAGTGATGAAATTATTTTTCTATAGCCCAAGGATAGAGTAAGTACAACCCATTAATGTATGTGAGTAAGTTTAAATCTGACTGATGCTAAGAGAATAGTTCCATTATGGAACCTTTAACCTCAACTCCTTTGTCAGAAGTAGCAGGCGTAGCAGTGATGATTGAAGCATTTCTGCAGACAGTGAGGTTCTTAATGCAGAGTAGAAATGACCTGAAGGCTCAGTCCTTGTGTTAAATGCCTGACACCACTTCGCACATAATAATTAAGAGCAGAAGTAATCAATTTGCAAGGAGCTTGTTCTGGTAGTCAGAATGCACCCTGGTCCTCCCAGAGTCATTACTTTTAGCTAAAGAAAGAGGAAAGATTACTTGTCTAGGACCCGTTACCTCGGCAACTGTCTCAAGTAACTAAGAAAACCTAAAGAGCATATTGATCATCTGCAATGATGTCAAAAGGGCTCTGTTATCAGAATGACAGCTGGGTAGATTACAAAGGCACTTGGGTCTCACTGGGCAAGTAATGCCTACCTTCATCTCCACAATGTCAGTCACTTGAATAGAAACAGATGGGTGTGGGGAGCCAAGCACACCCCCCCACTTAGTCTTACATAGGTTTCTGTTCAGAAGAAGATTCACTTTATTTTTCTTTCTTCAGAAAGATGATGGTACTAATGTCAAAAAAGAAAATGTATATCTAGTATCTAATACACACCTATGCCTGACCAGTACATCCTTAGACAGCTCCCATAATTCCTGCTGTAAGAACTGGATTAAGATAAAATTATAATAATCTTAGCCTACAGTGGACTCTCCATGAATGTGGATGGATGGGAAAATCTGGGAGCCTTTGCCAGGAGACTGAATTCCCTAAAACCTCATCATGGTGGGCTTATCGTTAAACCAGAGTAATTGGGAAACACAAAATAAAAATGAGGAATAAGAGGTTCAGGTTCTAGGAGTGAAGAACAGCAACCACAGGCAAGTTTGCATGCACAGGAGATTGGTGGAGTTTAGGTGGAGTGTAGAGAACTGAGAAAACCCCAGAGCAAACAGAATGGTAGATGGGCACTGGGAGGAAGGTACAGGGATCTAGAGACTTTTCTTTGAGGTCACCTCCAAGGCCAGGTAGGACTGAAAGTAGAAGAAAAGCAAAGTGCAGGAGTTTGTAGAGCTGAGGGACTGGAACTTACACATCAGAGAGTAGGGCAGGGGACACAAAGGAAAGACACCAGGAGACAGTCTCCAAGTCATCATTCAAATCACTTTGAAAAACTTGGTTGACATATGGTCTGCTATGTGGATGGAATCTAATTCTATAACTTAAAGCATTAGAAATATTTGAAAGAAAACAAAACAAATCGACAAGCAAAATAAACCAAAAGCAGACAACAGAAAAAGATGGGGAGGAGACCCATATGTCAGGATCAACAGTCAAGGTGTCTTACTCCATTTATTGAAATAAGTTTAATCATTTAAAGGAAAATGTGGTTATAAAGGATGAACACATAAGAAAACCCAACACTTGGGAAGCTGAGATAGGGGGATCTTGAGTTTGTAGCCACCATGGCTGCATAGTGAGATCTTATCTTAAAAACTGATGTATAGAGTGAGTTTAAAGTTGACATGGAAAAGCTAATTTCTTAGAATGAGAAGTTGATTTCCAATGTAAGTACAAGAGGACAAAGGAATGAAAACTATTCAAGCTGGGAGGAGAATGAAATTGGAGGATTCCTCCCACTAGTTTTGTAGCCTCTCTATGAAGCTACATGGACCAAGGTAAATTACACTGCTGAAGGAAGGGTGGTAGGTGTGATCTTGAGATGTGTCCACATATGCATAGCCGGTTGAGTTTCACAAGGATACAGGATAGTCAATAGGTAAAGGAAATACTTTCAGTTAACTACCAATTGTCATTTGAATAAGTGTCTGCAAAGCCATTAAGGGACTCAACCAACATCTGGAGCGAACATAAAAACCAATTTGATATAAATTTCAGACACAAATGTTTAATGTTAAGCCATAAATGTCTTAAATAGAGAGTTGTTCCTGATCTAGAGATAGGACAAAAGTAGAAGGGGGACCACAACCTGAAAGAAACAATTTCAGTACATACACTAACAGGTATTCTATATAGTGTATGTCTGTCTGACAGATATCATGGATCATTTGTAATGAATACCTGATAAATTAATAATTATAAATTAGTTTACATATATTTGCTAACATTCCAAATATATTTTAGGAGTCAGGGCTGGAAAGACAGATCAACTGTTCAGAACTGGCTGCTCTTGCAAAGCACCGAGGCTCAGTACCTAACATGGTGGTCTACCACTGCCTATAACTCTGGTTCTGGGGACTCTGACACACTCTAGCCTCTAAGGACACTACACATGTGACATACACATGTACATGCAGGCAAACACTCATACACATGAAATAGAATGAATAAACCTAAAAGTTCTACAAACCTGAAACTCAAGGTCAGTCTAATTAAAGAATGAGTAAAATATTCGAGTAGCACTCCTCAAAAAAGGACACAAGAATAATGAATAAACACTAAAAAATATTGATTCTGCCTAGTGAACACGAAGCCCTCTGTTCAATCCACAGTATAAAACAAAATAGGAAACAAAGCAATCATAACCAATATGAGACCACAAGTGTCCCCACACTATTTCTGGCAGAAATGGACAACATATATTTAAACACAAGGAAGTGGTTGCAACTGGTTCCGAAAAAAATGTCCTTTAAGATTATCTAAGTCAAAATACGAAAAACATTCAAGGTTCCTGGTAATTAAAGAGACATAGATGTAGTGCTGATGGACTGGGGAATTTTTTTTAAACATTTCAAAGTTCTTTTCTCATCACTGAAAGTAGAAATACCAACGGTGCTATGGCTAACAACCAGCACATCTGAGAAACAACATGTCTGAGGGACCTCCTCCAGCCATAAACTCTTGAGCTGGAGTGAAGAAGTAAGGCCTCAGGAACCCGGATGTAGATTTAGGAACCCGGATGGGGAGACTTAGGAACCCGGATGCAGAGATTTAGGAACCCGGATGCAGAGATTTAGGGACCCGGATGTAGAGATTTAGGAACCTGGATGCAGAGATCCAGGAGCCCGGATGCACAGAAGTAAAATGTATATGAAAAAGTTAGAACATTTCTCTCAGTCCCTCTCTTCTATTTTTATTCTAAATGATGCCTTGTGAGCAATCTCTACAAATACCGAGGGGAAAATAGACAAAGCAGCATTGGGGTGTGCAAAATCCTTGTTTGTGGCTTCGAAGAGGAACATAATGTCTCGAACCGCAGTCATGGGATCTCTTGGTGTTTTACCATGAGCTCTCGGTCGCCTCATCCTTCCTTCCCGTAAGACCATAAAGAAAGGGGCGTCACTTTGCTTTCATTCATTCATGTCACTTGGAAACTTTTCCTAGCGCAAGGGTTTTGGGGACAGTGCCAACAAACAGTGCTCTCTCTCTCTCTCTCCCGAGTATAAACAGTGAACTTGGCAGAGGATTAAAATGTCCTTTCCTGTTTTTGTCTCCCTGCAG
Seq C2 exon
ACGGAACTCCCAAAATCATTTCCGCCTTTAGCGAGAAAGTGGTGAGCCCGGCAGAGCCAGTGTCCCTCGTGTGTAATGTGAAGGGTACACCCTTGCCCACGGTCACCTGGACCCTGGACGATGACCCCATCCTCAAGGGCAGCGGCCACCGCATCAGCCAAATGATCACGTCCGAGGGGAACGTGGTCAGCTACCTGAATATCTCCAGCTCCCAGGTCCGGGATGGGGGTGTCTACCGCTGCACTGCCAACAACTCGGCTGGAGTCGTCCTGTACCAGGCTCGAATAAACGTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992:ENSRNOT00000002215:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=94.6)
A:
NA
C2:
PF0767911=I-set=WD(100=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]