RnoINT0060048 @ rn6
Intron Retention
Gene
ENSRNOG00000003287 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr10:49282697-49288995:+
Coord C1 exon
chr10:49282697-49282839
Coord A exon
chr10:49282840-49288806
Coord C2 exon
chr10:49288807-49288995
Length
5967 bp
Sequences
Splice sites
5' ss Seq
TAAGTAGGT
5' ss Score
4.16
3' ss Seq
GCTGTTCTCTTCCCTTCCAGGGA
3' ss Score
11.83
Exon sequences
Seq C1 exon
ACTCTCACTGGGCACGAGGGAGCCGTGAAATGCCTGTTCTTTAACCAATGGCATCTCGTCTCTGGAGGTGCGGATGGGCTGGTCATGGCCTGGAGCATGGTGGGAAAGTACGAACGGTGCCTGATGGCCTTCAAGCATCCTAA
Seq A exon
GTAGGTGCTGGGGAGTGGGGCGGTAAACGTGCAGTCTTCGGTGGATCGGTCCCTCTGTGCGCTGCTGCTCTTCCGGCCCTGCCCTTTTTTGCTTTCTTCTCATCTCTACGACCATCCTCCCACCTGGACATTCTTTCCTACCCCCCTCCCTGCCCCCCACTTGCTTCTCTTGAGAAATAACAACATTAGATACAAAATTTGAGAAGTTGTTGGGAGAAGTGGGGCGGAGTGAGAGCAGGTCTCTCTGTGTAGCCCAGTCTGGCTCGGAACTTGTGACGTTGCTTCAGCCTACTGAGTGCTAAGATTAAAGAAAACACGTGACACACCGTAAACTCACATCTGTTAGCTATTTGGTGCACCGGCAGACTGTCCCAAATAATGCCATCTCTAAACTTAGTACTCTTAACCTTGGCCTCTATGCCAGGAAATGTGCTCGCCAAACCTTAAAGAGACCCACGCGCCAAGGCTTAAAAATAACAAAAGATACTTAAAAAGTTTATACTTCAAAGTTTACCGACTAGGTTCTGTTCCAGGCCTGCAACGGGCTCCATTTTCCAATTCCAGTTCAGATTTAGTGCTGATGGCTGTTTGGTGCCTATTAAAAAGTATTCTGAGGTCATAGCTGGGCTCAGCTGGAAGGGCTACGGTGGCCAACTAATGATTTTGCTATGCCTGTGGTGTTTTAGACTACACGGATAATGCTTCTTACCCTCAGTGCATTAGAGTGCCAAGAAACAAAATGCTATATTACTTGATTAAAAGAGTCAGTGGATTCCCTAGGGGAATCTGAGGATAGTCATTTAATACGTCAAGCTCTAGATTTCTCTACACTCTGTATACACCAGCCTTGTGAGGGGCATGTGGTATGTGTGTGCACATCTCTATGCTCTTTGTGGTACATGATAACGACATTGTTACCAAGTGGGTACTAGGAAAAGCCTGTGCTCGGTGGATTTACCTAACCCTCAGGGAACTGTGGGGAAACCTTTCAGGGCACCACCTGGACAGTCAAGCTATGACCTCAACAAGGGAGTCAACTCTATGCTGTCCCCTGGAAAGTATTAACTATATGTTTTTAAAACCTTCTAAATAGCACCCAGTAAGACTTAGCTACCGGAGTCATGTTTTCAGCCAGTCTCACAGTTTGTCGACTCATTAATCCATGGGCCTTCTGTCTGCTAGCAGACAACTTCAGATACTACCACCCTCCATGGATGTCACCACCGACATATGATTCATATTTGTTAATTTACAAACTTTAAATTAGATTCACTCGCTTTATTTTATGTGTGAGTGTTTTGCCTGCGTAATAAACATGTGCATCATGTGACTGCTTGGTTCTTGTGGGGGTCAGAAGAGGGTGTCGGATCTCCTGGAACTGGAGTTACAGGTGTTTGCAAACCATGATGTCTGTGCTGGGAACCAGGCCTAGTCCTCTGAAGGAGCAATGCACGCTCTTAATCATGGAACCATCTCTCCAGCCTCATTGGTTCTTGATACCTAGCAAGGACACAGAAAGACCATAACTCCCTGGAGGGTGTGGCTAAGGCCTTGTTTGCAGGCCTCTTCACCCTTCTGTAATGGTGTTAGCTAGACATAAGCTGCTCAAAAAGTTGCTTAAAATTTTTGATTGGCAGCAAGCATTGCTTTATAGATTGCTTTTGACGGATTCTAGTGATTGGGTTGAATATGGTAGACAGTTGGCATCTGGAAGAGGAACCAGAGAAAGGCACCTCCTTTAATTCAATGTTTTCAACTAAAATTGTGATTTTTGATTATAGTGAGGAAGAAAGTTATGAGAGAAGAAATCTGAGCATGAAAAGTTGGTTTGACAGATGGCGATCTTATACTCTGGATTTAAAAAACAAAACTTCAACGTCTTTTCCACAATGCACAGCATAATTAACTTTTTTATAATTGGGACATAGCTTCCATGACACAAAGTTCACTCCATTAGTCTGTAGCAGTTTGTAGTATATTCACAGTGTTATACATTACCTACCTATAGAACCTTCTATCCATCAGCAGAAATGGTCCCTAGTTCCTTCCTTCTTCCTTGGACCTTCTCTCTTGTTCTACTTCTTTTTGCAGTGCTCAGAACTGAACCCAGGGCCTCCCAGCCTAGGCAAACAGCCCGAGCTATGCCCAGAGCAATTCCTCGTGTATTTTCTTGGCCAGTTTCAGTAAAGATTTGTTGAGTGTCTATCAAGCTTTCTTGATCTTTTCAAAGGATCAACTTTTTGTTCCATTGATTTGCTGGATTTTTTTTTTAATTCACAACACAGTTAATTTATGCTATAGTTTTTATTATTTCTCTCCTTCTGCTCGATTTTGTTCTTTTGTTTTCCTTCTTCTTGGTTGTAAGTTAAAAACGGTTGGTTACCGATCAGAGAAATGTGCGCATCAGTGCTATCACGTTCCCCCTGAGCATCGCTTTAGCTGGTTTGTGTTTATGGTAGGGTCTTGTTATAACGGGTGGTCTCCTGCCTCACCCTTCTGAGTGATGTATTTTCATTTTTATCTCAGACCTTTCCTAAGCTTGAGCTCTGGACACGTTTGGATACCAGATTTCTGGGATTTTGGTCCTGGACCTCTCACTCCCCAGCATTTTCCTGGCTTTTTAGTTAGTATATCGTTTGCCTGAGTGCATTTCTAGGACCTCAGGTAGCAAGACCCCAATTATCTACCTGTGAGCATTTCCAGCAAACGCCCCCTCGGGTAGCAGATCCCGCATTGAAAGAGTTCTCAGGTAACAAAGATAAGCCTTTAAGACAGTCTTCCAAGAAGCCACTAGACAGCACACTTAACTCATCATGGTCACAGCCTGTTTAGTTCCTTCTCACACCAAGACTGAGGCTACTCTTCTCATGGCTACCTCTGTAGTATAGGGTCAGTTAACACTGCACAAAACATGGCACTCTTATCGACTCTAAGGCTACTTTTTTCCTGTCTAAATGCTTCTTGGGATACCATAAGCCTTCTGTAGTTTCTCAGGATTCTGAAAATAACTTAAAAAAAAGGTTCTGACAGTTTTGTTGCTGTTACAGAAGGTTGGAATTCTGTAGCTCCTGTCTCCATCATCGCCATTGATGTAATTTCTCCAAGTAAATTTCAGAAAGCAAGAGCAAAGCAGGAGACATCTACAGGCCAGATAAAGCCCCAAAGGGGTCTGAGATAGTTTACGACCACCACTTGTCAGGAACTGGAAAAATTAAAAAAAATCTGTTAACTTAATTGTAACAGATATTACATGAGATGGAAATTAATACTTCTTTTTGTGGGGTGTGTATGGGGGGGACCTGAGGAAAGACTGGGAGGTTAACGTGCTTCCTCAGTGGTGGATGGAGCAAGTTTGTGGTGCTGTCAGGTATCATAGGTTTCTGACTCTGAAGCCTATATTGTAACTAACTATAGGCTACACTGGTATGGCTTGAATTACCAAAATGTCACAAGAACCTGGGGGAAGTGTAGGCAAAGTCAAGAAAGACACAGTAAGGGAGACCCTTCTGCACAGGGAATTTCTATTTTCTCAGTGTTGGATTACTGCACGGGCAGACTAAGGTTGCTTAAGGTATCAAAATGCTAAAACTTGGTTGAATGTTTAAACATTTGAATAAAAGCTCAGCTCGATATCTTCCCCTACCATGTAAGGAGGGATCCAAGGCACACTGGCTCCGCTCCTTTCAGATATGCTGAGCCTGCACCTGCTCTCTGTGGTCTTTGTGTTTCTTTTTTGATAGATGTTAGGGCATTGAACAGTCTTCATCTGGCCTGAGACCAACCAAAGGCCAAATAGGGTAGACGTCATTCTTTTAACATTTCTGCAGCAATGGCCATACTCTGAAAACATCTTTAAATGAATAAGTTTAAGACCTGCTTCAGGCTAGGGAACCATGCTATGTGTTGAACATTCAGTGGAGCATGAGCTGATCCCAAGAGGATCTGACTGTGTAGGTGAAGTTTGTATGTGCATGTAGTGGGGAGGAAATGGAGAGAAATCTGTTTTATTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCTTCCTCCTCCCCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAGTAGGCCCCATCTCTTTAAAGTTTCTCTCAACATTGGTACCCTGGAGACCAAGATTCTAGCATGTGAACCATCTGGGGACACACTCAACCCATATACAAACCATAGCAGATCTAGGTGAGTAGATCTAGGTAGCTTGTTTCTCATGTGCCATTTAACAAATTGATGGGATTAAATCCGACTTTTCAAGGCCATCAATTAAAAAGGCATTGTAGTGATCAGAACTGAATAAACCCTGTAATTTGAGAAGGACTGCTTTGGAGGCATCTGTCTGAGGTTTTCCCTGGCTTCCTCCTTTCCCTACTGGCCATCACAAAAAGACACAAGTCTCATGTTAAGGTATACTTTTCTTTAAGGATGTTCACTGTCAGAAGGAATGAAAGTTGTTGCTGTATATTTAAAAAAAAAGCCAGTTTCTCTTATCCCACACTAGTGCTGGCACTGTAGGGCCACATGGCATCTATGGGATATTTTCCTCTCAGTCAACAAAGTGTCTCGCCTGCTAAGCTCCATCCAATATCACACTGCTGATGGCTACTCTCTGGGCCCAGCAACAATCTCTCTACCTATCTAGCTCCCAAGGCAGACTGCCACCATGCCAGACATACACATCCCAATTCTGTGGCAGCCCATTGTGTCCCCCACCACACACTCTCTTGAACTCAATTAAATCGCCACATGAAAGAACACACAACACAATAATCTCTGATCCAATTGATAAGACATAATTACCCACCTAGATAAGATATAGTTTGCTCATCTAGACCCACAAAGTCCTGTACACATCCATCCCTTAAGAATATTTATAACAACCTGTAAATGTGCAGAGAGAAATCTTAACATCTGCCTCCATGTTCTTTTGGCTGCTCCCCTCTCCTCTCACTCCGGTCTCTTCCCTCTCTAAAACCTTTTCTCCCGCCCATCCTTCCTCCTTGTCCAATGACAGACCTCGTTCTATCCTGTACCTGCCTTCACCTGCATAATGACATCAACCTACAGAAAGTCATTCATTAAAGAACAAAGAGAGAATATATACATTTAAGATGTCTGTTCATATAAAAGTAATCCTTGAGCCAGGCAGTGGAGGTGCTATGCCTTTAATCCCAGCGCTCAGGAGGCAGAAGGCAGGTAGATCTTTGTGAGTTTGAGGCCAGCCTGGTCTACAGAGCGAGTTCCAGGACAGCCGTACTACACAGAGAAACCCTGTCTTGAAAAACCAAAACAACGCTGTTGCTGCTGCTGCTTCTCCTACTGCTGATGGTCATCCTTAGCCTTACACTGGTCTTTCTTCCGTAATAAGACGGTTATACAAGAAATGGTTCTAAAAGGAATTAAAAAAAAAAACAACTAATTCTCAGAATAAATAAGTAGCTAAGAATCAAATTGCACAAATAAATAAATGGCCATCTGAGGTATTAGGCATCTCTCCTCAACTGCCCCTTAAAAACCAAAGTCCTTAATGACCTGTGATTAAACCGTGAATGGGGATTGCATCTGATGGTACATGATTTAAATCTAGAATTCTAAAACGGGGAAACGCTACCTCAAGGTCAGGTTTGGCTCCTACCTCCCAAGCCCACCACCCGAGTGCCCCAACCTGTTTCCACAGGGCAGGTGTTGTTTGCTGTTCTCTTCCCTTCCAG
Seq C2 exon
GGAGGTGCTGCAGGTGTCTCTCCTCTACCTCCGGGTCATCAGTGCCTGCGGTGACGGCAAGATCCGAATTTACAATTTCCTCAATGGGAACTGTCTGAAGGTGATAAAAGTTGATGCCAGAGGTGACCCTGTGCTATCCTTCTTTTATCAGGGCAACAGGTGGGTGGTAGGTAGGTGTGGAGGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003287:ENSRNOT00000091100:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(83.8=64.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]