RnoINT0060946 @ rn6
Intron Retention
Gene
ENSRNOG00000010714 | Fgl1
Description
fibrinogen-like 1 [Source:RGD Symbol;Acc:620169]
Coordinates
chr16:54183965-54184390:+
Coord C1 exon
chr16:54183965-54184053
Coord A exon
chr16:54184054-54184210
Coord C2 exon
chr16:54184211-54184390
Length
157 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
GATAGCTCCTTTTCCTTTAGTCT
3' ss Score
5.59
Exon sequences
Seq C1 exon
GAGACTACACTTTAAAAATCGACCTGACAGACTTTGAGAAAAACAGCCGCTTCGCACAATACGAAAAATTTAAAGTTGGCGATGAAAAG
Seq A exon
GTACTAGAAATTTTATATAGGCAATGTCTTGAGTTGACGTTGAAAATACACATCTAAGCCCGGAAGTCTGTGGAGGTAGAAATATGTAATGTAGCCTGTTTTTGTTTATTGAATGCGTTTTCAAAACATTCCCCACTGATAGCTCCTTTTCCTTTAG
Seq C2 exon
TCTTTTTACGAACTGAATATTGGAGAATATTCTGGCACCGCCGGAGACTCCCTGTCGGGAACATTTCACCCTGAAGTGCAGTGGTGGGCTAGTCACCAAACAATGAAGTTCAGCACACGGGACAGAGACAACGACAACTACAACGGGAACTGTGCTGAGGAGGAACAGTCTGGCTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010714:ENSRNOT00000014248:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.137
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.7=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(31.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACCTGACAGACTTTGAGA
R:
AGCCAGACTGTTCCTCCTCAG
Band lengths:
246-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]