GgaINT0072859 @ galGal3
Intron Retention
Gene
ENSGALG00000013606 | FGL1
Description
NA
Coordinates
chr4:64708797-64709622:+
Coord C1 exon
chr4:64708797-64708885
Coord A exon
chr4:64708886-64709434
Coord C2 exon
chr4:64709435-64709622
Length
549 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTCTTCACAATTTTCATTAGCAC
3' ss Score
3.25
Exon sequences
Seq C1 exon
GAAACTATACTTTAAGAATTGATCTAAGTGATTTTGAAGGAGAACGGCGTTATGCACAATATACAAGATTTGGAGTTGCAGATGAAGAG
Seq A exon
GTAAGAAAATACTTAATAATAACTGGAGGTTTTAAAGAAAATGTCACTTCTATAAACAGTCAATAAACATACATGTGCCTTTATTTTCATAAAGATTTATGCTGAACCTTGTTAACAAGTATTTTTTCTTACAAATGGTTGGCATTTTCAAATATGTCATAATAGTGGTTTATATGGATGTACTGATTTCATATCTCATAGAATTTGTATGAATCATTAGTTTTAGCAGTTATGGATACAAGCAATTTTTCAATTGTTATTGTTATTATCAGCAATAATGGTACATAATTTCTCAATACGTACCCTAAACCAACTAATAGCTTTTTTTTGTTATTTCTACATAAAATTATTGAATTTTTTTTACCCCTGGTAAGCATATGTATATTTCTTTATTCACTAGTACAGTGTTTGAGTGGCAAGACACTCCTGGGCATATGAATAGTAGCAAATGGAACAGGTTAGTTTCTTTGTGGATTCACTCCCTGACATACTAAAGGTTAGAGACATACTGGATTACTTTATTTTTTCCTTCTTCACAATTTTCATTAG
Seq C2 exon
CACTCCTATCAGATGAGCTGTGGTGAATACTCTGGTACAGCTGGTGATTCCCTAACTGGGGGATTTCATCCTGAAGTAAAATGGTGGGCTGATCATTGCGGAATGAAATTCAGTACTAGAGACAGGGACAATGACAACTATGAAGGCAACTGTGCTGAAGAGGAAAAGGCTGGCTGGTGGTTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013606:ENSGALT00000022137:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(12.8=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(27.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGTGATTTTGAAGGAGAACGGC
R:
CTGTTAAACCACCAGCCAGCC
Band lengths:
254-803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]