DreINT0010834 @ danRer10
Intron Retention
Gene
ENSDARG00000057004 | FGL1
Description
fibrinogen-like 1 [Source:HGNC Symbol;Acc:HGNC:3695]
Coordinates
chr10:24718534-24718904:-
Coord C1 exon
chr10:24718816-24718904
Coord A exon
chr10:24718725-24718815
Coord C2 exon
chr10:24718534-24718724
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATG
5' ss Score
1.16
3' ss Seq
TTCCTCTCTGCTCACTATAGGAT
3' ss Score
9.24
Exon sequences
Seq C1 exon
GTGACAGTGTGATGAAAATTGATCTGACAGACTGGAAAGGAGGGAAATCATATGCCATGTATGACAACTTCAAAGTGTCAGATGAAAAA
Seq A exon
GTAATGTTCTTTTAGGTTCTTACCATTATTTATGCATAAAAGAAGTTCATATGGATGAAGTCTCAATTACATTCCTCTCTGCTCACTATAG
Seq C2 exon
GATAAATACAGGCTGTACTATGGGATGTACAGTGGTCAAGCAGGAGATGCCTTGTCCGGAGGAGCCAATATGGTGGAGCAGTGGTCAGCCTCCCATAATGGCATGCAATTCAGCACCAGGGACCAAGATCATGATCGGTACCTGCAGGGAAGCTGTGCTGCAGAGAACAAGGGGGGCTGGTGGTATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057004:ENSDART00000079566:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(12.7=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGACTGGAAAGGAGGGA
R:
TGGTGCTGAATTGCATGCCAT
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]