MmuINT0064363 @ mm9
Intron Retention
Gene
ENSMUSG00000031594 | Fgl1
Description
fibrinogen-like protein 1 [Source:MGI Symbol;Acc:MGI:102795]
Coordinates
chr8:42282312-42282756:-
Coord C1 exon
chr8:42282668-42282756
Coord A exon
chr8:42282500-42282667
Coord C2 exon
chr8:42282312-42282499
Length
168 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
TGACTCCTTTTTTCCTTTAGTCT
3' ss Score
9
Exon sequences
Seq C1 exon
GAGACTACACTTTAAAAATCGACCTGACAGATTTTGAGAAAAACAGCAGCTTCGCACAATACCAAAGTTTTAAAGTTGGTGATAAAAAG
Seq A exon
GTACTAAAAATTTTATATAGACAATGTCTTGAGTTAATGTTGAAAATATGCAACTAAGCCCCAAAGTCTGTAGAAATAAAAATATGCAATATAACCTGTTTTGTTTACTGAACGTGTTTTCAAAACGTTTCCCACTGATAGTAAAAAATGACTCCTTTTTTCCTTTAG
Seq C2 exon
TCTTTTTATGAACTAAATATTGGAGAATATTCTGGCACAGCTGGAGATTCCCTGTCAGGAACTTTTCATCCTGAAGTACAGTGGTGGGCTAGTCACCAAAGGATGAAGTTCAGCACGTGGGACAGAGATAACGACAATTACCAAGGAAACTGTGCTGAGGAAGAGCAGTCTGGCTGGTGGTTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031594-Fgl1:NM_145594:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(12.8=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(27.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAGAAAAACAGCAGCTTCGC
R:
TTAAACCACCAGCCAGACTGC
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: