RnoINT0066911 @ rn6
Intron Retention
Gene
ENSRNOG00000046128 | Gpr108
Description
G protein-coupled receptor 108 [Source:RGD Symbol;Acc:735149]
Coordinates
chr9:9712634-9712973:+
Coord C1 exon
chr9:9712634-9712764
Coord A exon
chr9:9712765-9712929
Coord C2 exon
chr9:9712930-9712973
Length
165 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
TATTCCTCCACCCATTCCAGGTC
3' ss Score
9.11
Exon sequences
Seq C1 exon
GTCCTGGCTAATGTAGCATACATTGTCATCGAGTCCCGTGAGGAGGGCGCCAGCGACTATGGACTCTGGAAGGAGATCTTGTTCCTGGTGGATCTCATCTGCTGTGGTGCCATCCTCTTCCCAGTGGTCTG
Seq A exon
GTGAGGATGGGAACCCGCCCCTCAACCCACCTGAGGCCCTGCACCCTCACCTGGCTGGAGACCTGCCTGCCAGCCCCACCAAGACCCCTACCCTCCCCCAGAAGACTCCTGTACACTGGACGGGGTCAATACTAATTAGTTCCCATATTCCTCCACCCATTCCAG
Seq C2 exon
GTCCATCCGGCATCTACAGGACGCATCTGGCACTGACGGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046128:ENSRNOT00000075403:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(14.8=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(5.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGCATACATTGTCATCGAGTCC
R:
CTTCCCGTCAGTGCCAGATG
Band lengths:
163-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]