MmuINT0072824 @ mm10
Intron Retention
Gene
ENSMUSG00000005823 | Gpr108
Description
G protein-coupled receptor 108 [Source:MGI Symbol;Acc:MGI:1925558]
Coordinates
chr17:57236697-57237001:-
Coord C1 exon
chr17:57236871-57237001
Coord A exon
chr17:57236741-57236870
Coord C2 exon
chr17:57236697-57236740
Length
130 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
ATATCCCTCCACCTGTCCAGGTC
3' ss Score
7.62
Exon sequences
Seq C1 exon
GTCCTGGCTAATGTAGCATACATTGTTATTGAGTCCCGTGAGGAGGGTGCCAGCGACTATGGACTCTGGAAGGAGATCTTGTTCCTGGTGGATCTCATCTGCTGTGGTGCCATCCTTTTCCCGGTGGTCTG
Seq A exon
GTGAGGACCTGGACCTGCCTGCCTGCCTGCCTTCCAGCCCCACCGAGGCCCCTGCCCTACCCAACAGAAGACTCCTGTACACTGGACGGGGTCAATACTGAGCACTTCCCATATCCCTCCACCTGTCCAG
Seq C2 exon
GTCCATTCGGCATCTGCAGGATGCATCCGGCACTGATGGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005823:ENSMUST00000005975:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(14.8=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(5.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCATACATTGTTATTGAGTCCCG
R:
CTTCCCATCAGTGCCGGATG
Band lengths:
162-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types