MmuEX0021633 @ mm10
Exon Skipping
Gene
ENSMUSG00000005823 | Gpr108
Description
G protein-coupled receptor 108 [Source:MGI Symbol;Acc:MGI:1925558]
Coordinates
chr17:57236374-57237001:-
Coord C1 exon
chr17:57236871-57237001
Coord A exon
chr17:57236697-57236740
Coord C2 exon
chr17:57236374-57236423
Length
44 bp
Sequences
Splice sites
3' ss Seq
ATATCCCTCCACCTGTCCAGGTC
3' ss Score
7.62
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GTCCTGGCTAATGTAGCATACATTGTTATTGAGTCCCGTGAGGAGGGTGCCAGCGACTATGGACTCTGGAAGGAGATCTTGTTCCTGGTGGATCTCATCTGCTGTGGTGCCATCCTTTTCCCGGTGGTCTG
Seq A exon
GTCCATTCGGCATCTGCAGGATGCATCCGGCACTGATGGGAAGG
Seq C2 exon
TGGCAGTGAACCTGGCCAGGCTGAAGCTGTTCCGACATTACTACGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005823_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(14.8=100)
A:
PF068148=Lung_7-TM_R=FE(5.2=100)
C2:
PF068148=Lung_7-TM_R=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCAGCGACTATGGACTC
R:
ACGTAGTAATGTCGGAACAGCT
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types