RnoEX6038507 @ rn6
Exon Skipping
Gene
ENSRNOG00000046128 | Gpr108
Description
G protein-coupled receptor 108 [Source:RGD Symbol;Acc:735149]
Coordinates
chr9:9712634-9713248:+
Coord C1 exon
chr9:9712634-9712764
Coord A exon
chr9:9712930-9712973
Coord C2 exon
chr9:9713199-9713248
Length
44 bp
Sequences
Splice sites
3' ss Seq
TATTCCTCCACCCATTCCAGGTC
3' ss Score
9.11
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTCCTGGCTAATGTAGCATACATTGTCATCGAGTCCCGTGAGGAGGGCGCCAGCGACTATGGACTCTGGAAGGAGATCTTGTTCCTGGTGGATCTCATCTGCTGTGGTGCCATCCTCTTCCCAGTGGTCTG
Seq A exon
GTCCATCCGGCATCTACAGGACGCATCTGGCACTGACGGGAAGG
Seq C2 exon
TGGCAGTGAACCTGGCCAAGCTGAAGCTGTTCCGACATTACTACGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046128-'23-19,'23-18,24-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(14.8=100)
A:
PF068148=Lung_7-TM_R=FE(5.2=100)
C2:
PF068148=Lung_7-TM_R=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGTCATCGAGTCCCGTG
R:
CTTCAGCTTGGCCAGGTTCAC
Band lengths:
138-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]