GgaEX1027208 @ galGal4
Exon Skipping
Gene
ENSGALG00000004052 | GPR107
Description
protein GPR107 precursor [Source:RefSeq peptide;Acc:NP_001025857]
Coordinates
chr17:5836434-5847040:+
Coord C1 exon
chr17:5836434-5836564
Coord A exon
chr17:5838387-5838430
Coord C2 exon
chr17:5846916-5847040
Length
44 bp
Sequences
Splice sites
3' ss Seq
TCTACTTCTTAATTTTTCAGGTC
3' ss Score
11.37
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTGCTAGCAAATGTGGCATACATTATTATAGAGTCAACAGAAGAGGGAACAACTGAATACGGACTATGGAAAGAAATCCTTTTCCTGGTAGACTTGCTGTGTTGTGGTGCCATCTTATTTCCAGTGGTATG
Seq A exon
GTCAATAAGACATTTACAGGAGGCTTCAGCAACAGATGGAAAAG
Seq C2 exon
CTGCTGAATGAAATGGCCACGCTGGTGTTCTTTGTCCTCACTGGGTACAAATTCCGTCCAGCATCGGATAACCCTTACCTGCAGCTTTCTCAAGATGATGAGGATGATTTGGAGATGGAAGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052_MULTIEX2-3/6=2-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(14.7=100)
A:
PF068148=Lung_7-TM_R=FE(5.1=100)
C2:
PF068148=Lung_7-TM_R=PD(8.2=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTGCTGTGTTGTGGTGC
R:
TGAGAAAGCTGCAGGTAAGGG
Band lengths:
134-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]