RnoEX0039573 @ rn6
Exon Skipping
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10641785-10659814:-
Coord C1 exon
chr3:10659684-10659814
Coord A exon
chr3:10656571-10656614
Coord C2 exon
chr3:10641785-10641834
Length
44 bp
Sequences
Splice sites
3' ss Seq
CTCCAATTGGTTATTTCTAGGTC
3' ss Score
7.04
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTACTGGCGAATGTGGCCTACATCATCATAGAGTCTACTGAGGAGGGCACAACTGAGTATGGCTTGTGGAAGGACTCTCTATTCCTGGTGGATTTGCTGTGCTGCGGCGCCATCCTCTTCCCAGTGGTGTG
Seq A exon
GTCAATCAGGCATTTACAAGAAGCCTCGGCCACAGATGGAAAAG
Seq C2 exon
CTGCCATTAACCTAGCAAAGCTGAAGCTTTTCAGACATTACTACGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589-'24-26,'24-23,25-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(14.7=100)
A:
PF068148=Lung_7-TM_R=FE(5.1=100)
C2:
PF068148=Lung_7-TM_R=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAGAGTCTACTGAGGAGGGCA
R:
GCTTCAGCTTTGCTAGGTTAATGG
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]