GgaEX0005411 @ galGal3
Exon Skipping
Gene
ENSGALG00000004052 | GPR107
Description
NA
Coordinates
chr17:6422944-6431749:+
Coord C1 exon
chr17:6422944-6423074
Coord A exon
chr17:6424897-6424940
Coord C2 exon
chr17:6431706-6431749
Length
44 bp
Sequences
Splice sites
3' ss Seq
TCTACTTCTTAATTTTTCAGGTC
3' ss Score
11.37
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTGCTAGCAAATGTGGCATACATTATTATAGAGTCAACAGAAGAGGGAACAACTGAATACGGACTATGGAAAGAAATCCTTTTCCTGGTAGACTTGCTGTGTTGTGGTGCCATCTTATTTCCAGTGGTATG
Seq A exon
GTCAATAAGACATTTACAGGAGGCTTCAGCAACAGATGGAAAAG
Seq C2 exon
CTGCCATTAACCCTAAAAAGCTGAAGCTTTTCAGGCATTACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052-'17-17,'17-15,18-17
Average complexity
C1
Mappability confidence:
89%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(14.7=100)
A:
PF068148=Lung_7-TM_R=FE(5.1=100)
C2:
PF068148=Lung_7-TM_R=FE(5.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATAGAGTCAACAGAAGAGGGAACA
R:
GCTTCAGCTTTTTAGGGTTAATGGC
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]