BtaEX6046679 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004204 | GPR107
Description
Bos taurus G protein-coupled receptor 107 (GPR107), mRNA. [Source:RefSeq mRNA;Acc:NM_001099164]
Coordinates
chr11:100460832-100477582:+
Coord C1 exon
chr11:100460832-100460962
Coord A exon
chr11:100464366-100464409
Coord C2 exon
chr11:100477533-100477582
Length
44 bp
Sequences
Splice sites
3' ss Seq
CTGCAAATGTTTATTTTTAGGTC
3' ss Score
8.57
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTCCTGGCCAATGTGGCCTACATCATCATAGAGTCCACCGAGGAGGGGACGACAGAGTACGGCCTGTGGAAGGACTCCCTGTTTCTGGTTGACTTGCTGTGCTGCGGGGCCATCCTCTTCCCGGTGGTGTG
Seq A exon
GTCAATCAGGCATTTACAAGAAGCATCAGCCACAGATGGAAAAG
Seq C2 exon
CTGCTATTAACTTAGCGAAGCTGAAACTTTTCAGACATTACTACGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004204-'19-25,'19-20,20-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(14.7=100)
A:
PF068148=Lung_7-TM_R=FE(5.1=100)
C2:
PF068148=Lung_7-TM_R=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCATAGAGTCCACCGAGGA
R:
TGAAAAGTTTCAGCTTCGCTAAGT
Band lengths:
142-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]