MmuEX0021632 @ mm9
Exon Skipping
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31044203-31063248:+
Coord C1 exon
chr2:31044203-31044333
Coord A exon
chr2:31047367-31047410
Coord C2 exon
chr2:31063199-31063248
Length
44 bp
Sequences
Splice sites
3' ss Seq
CTCCGCGTGGTTATTTTTAGGTC
3' ss Score
9.21
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTCCTGGCGAATGTGGCCTACATCATCATAGAGTCCACTGAGGAGGGCACAACTGAGTATGGCCTATGGAAGGACTCTCTGTTCCTGGTTGACTTGCTTTGCTGTGGCGCCATCCTCTTCCCAGTGGTGTG
Seq A exon
GTCAATCAGGCATTTACAAGAAGCCTCCGCCACAGATGGAAAAG
Seq C2 exon
CTGCCATTAACTTAGCGAAGCTGAGGCTTTTCAGACATTACTACGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(14.7=100)
A:
PF068148=Lung_7-TM_R=FE(5.1=100)
C2:
PF068148=Lung_7-TM_R=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGGGCACAACTGAGTA
R:
AGTAATGTCTGAAAAGCCTCAGC
Band lengths:
135-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: