HsaEX6063453 @ hg19
Exon Skipping
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:17830]
Coordinates
chr9:132866699-132872705:+
Coord C1 exon
chr9:132866699-132866829
Coord A exon
chr9:132869775-132869818
Coord C2 exon
chr9:132872649-132872705
Length
44 bp
Sequences
Splice sites
3' ss Seq
CTCTAAATGTTTATTTTTAGGTC
3' ss Score
9.64
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTCCTGGCAAATGTAGCCTACATCATCATAGAGTCCACCGAGGAGGGCACGACTGAATATGGCTTGTGGAAGGACTCTCTATTTCTGGTCGACCTGTTGTGTTGTGGTGCCATCCTCTTCCCAGTGGTGTG
Seq A exon
GTCAATCAGACATTTACAAGAAGCATCAGCAACAGATGGAAAAG
Seq C2 exon
GTGACAGCATGGGACCTCTTCAGCAGAGAGCGAATCTAAGAGCAGGAAGTCGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358-'16-18,'16-15,18-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(14.8=100)
A:
PF068148=Lung_7-TM_R=FE(5.2=100)
C2:
PF068148=Lung_7-TM_R=PD(1.3=15.0),PF068148=Lung_7-TM_R=PU(10.3=40.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCACGACTGAATATGGC
R:
TGCTCTTAGATTCGCTCTCTGC
Band lengths:
133-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)