HsaEX0028232 @ hg19
Exon Skipping
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:17829]
Coordinates
chr19:6731484-6732166:-
Coord C1 exon
chr19:6732036-6732166
Coord A exon
chr19:6731902-6731945
Coord C2 exon
chr19:6731484-6731533
Length
44 bp
Sequences
Splice sites
3' ss Seq
GTGTCCTCCACTTGTCCCAGGTC
3' ss Score
7.61
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTCCTGGCCAACGTGGCCTACATCATCATCGAGTCCCGCGAGGAAGGCGCCAGCGACTACGTGCTGTGGAAGGAGATTTTGTTCCTGGTGGACCTCATCTGCTGTGGTGCCATCCTGTTCCCCGTAGTCTG
Seq A exon
GTCCATCCGGCATCTCCAGGATGCGTCTGGCACAGACGGGAAGG
Seq C2 exon
TGGCAGTGAACCTGGCCAAGCTGAAGCTGTTCCGGCATTACTATGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PU(10.5=90.9)
A:
PF068148=Lung_7-TM_R=FE(15.8=100)
C2:
PF068148=Lung_7-TM_R=FE(16.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGCCTACATCATCATCG
R:
CTTCAGCTTGGCCAGGTTCAC
Band lengths:
147-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)