Special

RnoINT0071749 @ rn6

Intron Retention

Description
hepsin [Source:RGD Symbol;Acc:61982]
Coordinates
chr1:89534112-89534783:-
Coord C1 exon
chr1:89534619-89534783
Coord A exon
chr1:89534455-89534618
Coord C2 exon
chr1:89534112-89534454
Length
164 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCCTGTGGCTCTTTCCATAGACT
3' ss Score
9.44
Exon sequences
Seq C1 exon
GGTGACAGCGGAGGCCCCTTTGTATGTGAGGACAGAATCTCTGGAACATCAAGATGGCGGCTCTGCGGCATTGTAAGCTGGGGTACGGGCTGTGCTTTGGCCCGGAAGCCGGGAGTGTACACCAAAGTCATTGACTTCCGGGAGTGGATCTTCCAGGCCATAAAG
Seq A exon
GTGAGTTGCTATAGTTGGGGACTGTCTGGGACCCTAAGAAGGAGAGAGTAAGAGGGCACTCTGGAGAGCAGATGGATTCCCATAGGCTTCTGGGGATGAGACACTAGGTACAGAGTGTTGGGAGAACCGTCTGAGACCTGGGAAGCCTGTGGCTCTTTCCATAG
Seq C2 exon
ACTCACTCCGAAGCTACCGGCATGGTAACTCAGCCCTGACCCCGCCTCATCGCCTGCTCCGCGCTGCTCCAGCATCCAGAGTCAGAGTTGGTCTGGTGGCTCCAGCCGCACGTGGCAGGCTCCACACTGGGCCTCACATGGAACGGTTTTCTGCTCGGATCCAGTCCATAGATCCAAGGATGCTGGGTCCAAGGACCTCTCTTCCACAGTGGCCGGCCCACTCAATCCCAGGGCCATTGGCCTCACCCTCCCACCCCATGTAAATATTACTCTGTCCTCTGGGGGCTGCTTTCGAGGCGCCCCTTGTGCGGATGCTCTTTAAATAATAAAGGTGGTTTTGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021097:ENSRNOT00000028644:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.383
Domain overlap (PFAM):

C1:
PF0008921=Trypsin=PD(0.7=1.8),PF0008921=Trypsin=PD(96.2=89.5)
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGTAAGCTGGGGTACGGG
R:
ATCCGAGCAGAAAACCGTTCC
Band lengths:
257-421
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]